PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G120400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 563aa MW: 58079.7 Da PI: 8.5576 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.3 | 9.2e-41 | 160 | 266 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+qa+pai+++tgt++++a+++ ++s +ss+s+ ++ Manes.10G120400.1.p 160 TPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLRQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLLAP-- 247 789******************************************************************9997777888777722222.. PP TCP 91 aksaakskksqksaasalnlakes 114 +sk++++s + al+la++ Manes.10G120400.1.p 248 -----PSKSAPHSFHGALALAHHP 266 .....3333333333333333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-37 | 165 | 288 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.426 | 166 | 220 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MEVTDTQSNK QNNTTQEPHQ QHRHHHHHQV SFNGRSSSTG GGPSPPGPFM GSISIQAGLS 60 HVHHHLHGLS SSVPINTGSA PSTSTSSSLS SSSSSSSSTS TSTSSAAPPR LVDASLAIAT 120 RSGPLLDSGK KNLQQQNLSI VTTTSTTTAT TTTNTSVTAT PAKRSTKDRH TKVDGRGRRI 180 RMPATCAARV FQLTRELGHK SDGETIEWLL RQAEPAIIAA TGTGTIPANF STLNVSLRSS 240 GSTLLAPPSK SAPHSFHGAL ALAHHPHYEQ GFAHSALLGF HHQQQQQQHL MTSDQIAVAL 300 PCGGGGGGGG GGGGESGRDA RGDSGENYMR KRFREDLFKE DNQQQQEGES GSGGTSGGGV 360 GGGGGGGGSP IKGFKSGLQL PKPQQQDTGS CGLLRPSNNI SPATAMWAMA PAPSSGSTIW 420 MLPVGAAGGG PGISIGTTGA GPSEAQPQMW PFPTATPAGG NSLQAPLNFM PRFNLSAGNL 480 EFQGGRGTPL QLGSMLMQQQ PSQHLGLGMA ESNFGMLAAL NAYSRGGLNM NSEQNNQLDQ 540 HHQHQQPQGT DSTGDEDPNS SQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 355 | 368 | SGGGVGGGGGGGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G120400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626257.1 | 0.0 | transcription factor TCP8-like | ||||
TrEMBL | A0A2C9V6T1 | 0.0 | A0A2C9V6T1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034425m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-60 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G120400.1.p |