PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G108100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 680aa    MW: 75609 Da    PI: 5.7033
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G108100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22128228198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g+sW +++i+r++++r++lt+GW+ Fv++++L +gD ++F 
  Manes.10G108100.1.p 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNSWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL 215
                          99****************************964333..4459************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            + +++el+v+v+r
  Manes.10G108100.1.p 216 --RGENGELRVGVRR 228
                          ..449999*****97 PP
2Auxin_resp1111.2e-36254336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++ W +S+WrsLk
  Manes.10G108100.1.p 254 ASHAINTGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNMSSGWADSEWRSLK 336
                          789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-42118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-40125242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-20126228No hitNo description
SMARTSM010191.4E-20128230IPR003340B3 DNA binding domain
PfamPF023622.3E-20128228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223128230IPR003340B3 DNA binding domain
PfamPF065071.1E-34254336IPR010525Auxin response factor
PfamPF023091.2E-12550643IPR033389AUX/IAA domain
PROSITE profilePS5174528.685553646IPR000270PB1 domain
SuperFamilySSF542771.96E-12555630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAFTSTNHTP VGHPHAGGCN DALYKELWHA CAGPLVNLPR DGERVYYFPQ GHMEQLEASM  60
HQGLEQHMPS FNLPSKILCK VVNVQRRAEP ETDEVYAQIT LLPEPDQSEV TSPDPPLPEP  120
ERCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA SDLHGNSWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQISMPSSV  240
ISCQSMHLGV LATASHAINT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM  300
RFEGEEVPER RFSGTIVGVG DNMSSGWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV  360
ASAPSNSQPV QRNKRARPSV LPSPTPNLSA LDVWKPPTES PAFSYGDSQR GRDLYPSHNF  420
STTAKANSLG FSGNSLLSSV SPNSMYWPNR VESVTDSFVP VINKDSGERK QSTGNGYRLF  480
GIQLVDNSNV EETSPLAVAS GMGDDCPIVS LDAESDQNSE PSNINRSEIP SISCEPEKSC  540
LRSPQESQSR QIRSCTKVHM QGIAVGRAVD LTRFECYEDL LMKLEDMFDI EGELSGSTKK  600
WQVVYTDDED DMMMVGDDPW HEFCSMVRKI FIYTSEEVKR LSPKIKLPVN EEIKATKADG  660
DPDAAVNMED QSSVVGPGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033591355Auxin response factor 1
4ldw_A0.033591355Auxin response factor 1
4ldw_B0.033591355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G108100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625691.10.0auxin response factor 1
RefseqXP_021625692.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2C9V5550.0A0A2C9V555_MANES; Auxin response factor
STRINGcassava4.1_002969m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]