PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G106000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 299aa    MW: 32835 Da    PI: 8.343
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G106000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.3e-3277134260
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          + vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e e
  Manes.10G106000.1.p  77 KMVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEGE 134
                          679**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2579137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-2979131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3180131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.55981130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.8E-30214280IPR009057Homeodomain-like
SuperFamilySSF466891.44E-19217279IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-26218274IPR006455Homeodomain, ZF-HD class
CDDcd000860.00781219272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MELSSHEAGE IPIPISSSYG GGHGHGHGHG HGHMIHHDHH SPHNHIISSL APQMPSNNGP  60
SSMPSAVEDH HHAPFKKMVR YRECLKNHAA AMGGNATDGC GEFMPSGEEG TIEALTCSAC  120
NCHRNFHRKE IEGEASSCEF YTSNPHFSRF GRKLILGHHK NILAPEALGY NFPSRAAAAA  180
PHHQMMQLSY NMGSLPSESD EQEDGGGIIM ARPAQLVKKR VRTKFTQEQK EKMLNFAEKV  240
GWKIQKQEEA VVQQLCQEIG VKRRVLKVWM HNNKHNLAKK NNHSSPPITS PTATATTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-222172761675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G106000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626493.10.0zinc-finger homeodomain protein 4-like
SwissprotQ9M9S01e-76ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2C9V5720.0A0A2C9V572_MANES; Uncharacterized protein
STRINGcassava4.1_022170m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.16e-68homeobox protein 21