PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G100400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24973.8 Da PI: 10.4665 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.1 | 1.1e-18 | 18 | 62 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +sn vtfskRr g++KKA+EL +LC+ae+ +i+fs+ k++ + Manes.10G100400.1.p 18 KESNLLVTFSKRRYGVFKKASELATLCGAEITLIVFSPGKKVFSF 62 678999********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.315 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-25 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-24 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-21 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSRKSKGRQK LEMVKIPKES NLLVTFSKRR YGVFKKASEL ATLCGAEITL IVFSPGKKVF 60 SFGHPSVETV IDRFFTRNPP PTSGALQLIE AHRNARIREL NIQLTQVVSQ LEMDKKRGEE 120 LDQLRKVNEG QRWWESPIEE LDLPRLEQLR ASLEVLRQNV TKRAEQLLIQ TTNHPQFYTP 180 KPAIGVVPFD PKPEGFNTNM MPAAYNYNLG FRSGNGFF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G100400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625068.1 | 1e-161 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-60 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2C9V6H3 | 1e-159 | A0A2C9V6H3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033733m | 1e-160 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-63 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G100400.1.p |
Publications ? help Back to Top | |||
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