PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G066000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 270aa    MW: 31083.9 Da    PI: 8.3813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G066000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.6e-16130219198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +t+s+v+   +l lp +f+++h     ++  +tl de+g   e k+   k++    l++GW++F+ +++L +gD vvF+l++ +ef
  Manes.10G066000.1.p 130 FVKPMTQSHVTGGFWLGLPIHFCKDHLP--SRDEYITLVDENGDGTETKYLALKNG----LSAGWRGFAIDHKLVDGDAVVFQLVSPREF 213
                          89************************42..35568***************777777....9**********************9876666 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Manes.10G066000.1.p 214 --KVYIIR 219
                          ..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-20124220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-24124220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-23128219No hitNo description
SMARTSM010197.7E-19130221IPR003340B3 DNA binding domain
PfamPF023621.9E-14130220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVASKSNYEK IRQKRLEENK KRMEELNLKK LAVDLRTTSP KTSPVKQVKP RLPRLSTELV  60
PVRRSSRFAD KSPVSYKEVA FEPLERPRRS YSYQRRDLLN RIYASDEVRA HAIDRAEQLQ  120
SGLEADFPSF VKPMTQSHVT GGFWLGLPIH FCKDHLPSRD EYITLVDENG DGTETKYLAL  180
KNGLSAGWRG FAIDHKLVDG DAVVFQLVSP REFKVYIIRA YESEDNEEEN DKENDEEQEN  240
DKENNEDAGQ DVDVTPLNKR AKRTRASRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G066000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625443.10.0B3 domain-containing protein At3g19184-like
SwissprotQ1G3M38e-87Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2C9V5610.0A0A2C9V561_MANES; Uncharacterized protein
STRINGcassava4.1_024159m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-83B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]