PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G063900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 724aa MW: 80343 Da PI: 5.0362 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.6e-06 | 120 | 141 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ff++ G C GdrC F Hgp Manes.10G063900.1.p 120 PCFFFQK-GLCIKGDRCAFLHGP 141 6777777.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.803 | 24 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.1E-11 | 25 | 79 | No hit | No description |
SMART | SM00356 | 0.0018 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.512 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.052 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 115 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 116 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 119 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MIAARQQQQD KTTAMAPSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH SEYARVNPRD 60 CYYWLNGNCL NPKCGFRHPP LDGLFGSQAS DSGAASLPPS LMAVAPAMNS QQSSAKQAVP 120 CFFFQKGLCI KGDRCAFLHG PNPTSNKVSQ PTVPSINELS PQKKASVGSQ RLTQDHKISL 180 ANFSKVAGAA AEAKPVPKPE IGSLINAAGV ERNLPPSKSM DAELSKYKAT NLPPVNGNLS 240 RFNRLHQSQD DHVLQNGKDG DEILRESSPG FDVLVDDELR NSDYYHSEDQ YGRARGHEGR 300 SMNPVDEYDM GHTADYSSVA EFDRETYSSL RDYDTYDHMQ GQYAWEQHRP SSETVLERPA 360 HLEQRAYSKP DSPEPIDGSD LRYRLSKQRR VHGLRSVVSH DFVPENQVEE RGYRGSSRRD 420 AHNLPSHESS MSSLLRGRIK LPEQSPNGSN LHAEREIGRG RNWDRLSPGR SEIQSQQGRL 480 RDRIKARVEE HYNIEGRNLR GTRMRREMAN EGGIDFAGPK SLAELKGAKT TESRVQQSLG 540 KRKQLGDYQP SEGDLSFEGP MPLSEILKRK REAESAATGS GITSVSKNEN DQKECKESLL 600 GESNNAVVAE TQGDLSSMKD EASKQVHKDE GSTYAAAGVG TVGESVGQYS SQQPKPSETG 660 MIVDDGMEDH EYEADDQREG DYEYEQVDEG EYYEEGENAD AEEEYEDDED GDDFAKKIGV 720 MLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 496 | 505 | RNLRGTRMRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G063900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625805.1 | 0.0 | zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A2C9V3Q0 | 0.0 | A0A2C9V3Q0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002504m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9227 | 31 | 37 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G063900.1.p |