PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G052000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 334aa    MW: 36258.1 Da    PI: 7.0859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G052000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078149171123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Manes.10G052000.1.p 149 YECKTCNRTFPSFQALGGHRASH 171
                          99**********99999998887 PP
2zf-C2H2130.0003227249123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Manes.10G052000.1.p 227 HECSICGAEFNSGQALGGHMRRH 249
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.81E-9148171No hitNo description
PfamPF139123.1E-13148173IPR007087Zinc finger, C2H2
SMARTSM003550.052149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429149176IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-9222249No hitNo description
PROSITE profilePS501579.577227249IPR007087Zinc finger, C2H2
SMARTSM003550.011227249IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-13227251IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEAQEDITNN NIVRGKRTKR QRVQSPIPFA SLTNNSSTGD GDGDGDGDGD GDVCTNGKIF  60
TNMSPISSQE FHGSTQEEED MANCLILLAQ GQISNNFKHS STKQGDIDVA GVPTVAAVIT  120
TTATNNKFNS RKFLETGSPG SGKAGYYVYE CKTCNRTFPS FQALGGHRAS HKKPRNDEKK  180
QFGISSDEED GHLRDIISPL SLQLINNNNK NNRFIHSSGG QTKAKIHECS ICGAEFNSGQ  240
ALGGHMRRHR APIGANNSTT LALTPLAVES EEPKKARNLL SLDLDLNLPA PEDDILSFAS  300
KKQKQQQQQQ HQQEQQQKSS LVFSGPALVD CHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G052000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626662.10.0zinc finger protein ZAT5-like
TrEMBLA0A2C9V5080.0A0A2C9V508_MANES; Uncharacterized protein
STRINGcassava4.1_024395m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-55C2H2 family protein