PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G042900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23701.1 Da PI: 7.1631 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.8 | 3.2e-42 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdP+yG++g i +lq+q+++l Manes.10G042900.1.p 60 PCAACKILRRRCAEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQEIPESHRADAVSSMVYEANARIRDPIYGCAGAICQLQKQVNEL 149 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+l+++++e Manes.10G042900.1.p 150 QAQLVTAQAE 159 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.803 | 59 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-42 | 60 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGNLDKAVAV SSPFSYSPPS FSSSSSSISP SSQSSPTLPP PPPPPHPSPH PSTPCVVLSP 60 CAACKILRRR CAEKCVLAPY FPPTEPYKFT IAHRVFGASN IIKFLQEIPE SHRADAVSSM 120 VYEANARIRD PIYGCAGAIC QLQKQVNELQ AQLVTAQAEV VNMKSQQANL VALICMEKMT 180 QSHHLQEPIF QHHQYVDTSC FLDETNLGTP WEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-40 | 51 | 162 | 3 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-40 | 51 | 162 | 3 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G042900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626368.1 | 1e-159 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-71 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2C9V4E2 | 1e-157 | A0A2C9V4E2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026238m | 1e-158 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-73 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G042900.1.p |