PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G041100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 464aa    MW: 52221.4 Da    PI: 8.0028
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G041100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-17156205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.10G041100.2.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 205
                          78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-15156214IPR016177DNA-binding domain
PfamPF008475.5E-9156205IPR001471AP2/ERF domain
CDDcd000181.61E-11157215No hitNo description
SMARTSM003801.1E-31157219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-17157214IPR001471AP2/ERF domain
PROSITE profilePS5103217.477157213IPR001471AP2/ERF domain
CDDcd000181.04E-12248293No hitNo description
SuperFamilySSF541718.5E-7248292IPR016177DNA-binding domain
SMARTSM003802.1E-12249297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MLDLNLDIIS NESSCDGHHN NKNKDMVIIS REMEMFSAEE TAAAASRTTQ MEDSGTSNSS  60
IIINTEEAEN SFNSALIFDI LKKDEINPLG DFTTRQFFPD KIGNIELDLQ SGLSKTRPQW  120
LKLSQMEPSS EAELRIVQQK QQQMKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAL AAARAYDRAA IKFRGVDADI NFNLSDYDED MKQMKNLSKE EFVLILRRRS  240
TGFARGSSKY RGVTLHKCGR WEARMGQFHG KKAYDMAAIK CNGRDAVTNF EPSVYEGEVV  300
FDPSSREMSD HNLDLSLRIS APPSNDTGSC CFRYKDCELP KKETTVVENA RSLPKASKNL  360
PTLSGIYPGF LASNQEMVEE KKVEADSLLK SSSWPWNVNG NNNKKKNFAT ISEITSVAAS  420
SGFDSSATIT AFHINQQQQQ QQSHPVNNLC LTTPNKNSFH YYS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G041100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626224.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK033e-88RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2C9V3810.0A0A2C9V381_MANES; Uncharacterized protein
STRINGcassava4.1_007151m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-81related to AP2.7