PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G041100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 479aa    MW: 53902.3 Da    PI: 7.4726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G041100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17156205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.10G041100.1.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 205
                          78*******************......55************************997 PP
2AP238.82.2e-12248298155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +   g +k ++lg f+ + eAa+a++ a+ k +g
  Manes.10G041100.1.p 248 SKYRGVTLHK-CGRWEARMGQF--HG-KKCVYLGLFDNEVEAARAYDMAAIKCNG 298
                          89********.7******6663..33.6**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-15156214IPR016177DNA-binding domain
PfamPF008475.8E-9156205IPR001471AP2/ERF domain
CDDcd000181.71E-11157215No hitNo description
SMARTSM003801.1E-31157219IPR001471AP2/ERF domain
PROSITE profilePS5103217.477157213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-17157214IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17248307IPR016177DNA-binding domain
PfamPF008474.8E-7248298IPR001471AP2/ERF domain
CDDcd000181.74E-23248308No hitNo description
SMARTSM003802.3E-29249312IPR001471AP2/ERF domain
PROSITE profilePS5103215.501249306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-15249306IPR001471AP2/ERF domain
PRINTSPR003678.1E-6250261IPR001471AP2/ERF domain
PRINTSPR003678.1E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLDLNLDIIS NESSCDGHHN NKNKDMVIIS REMEMFSAEE TAAAASRTTQ MEDSGTSNSS  60
IIINTEEAEN SFNSALIFDI LKKDEINPLG DFTTRQFFPD KIGNIELDLQ SGLSKTRPQW  120
LKLSQMEPSS EAELRIVQQK QQQMKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAL AAARAYDRAA IKFRGVDADI NFNLSDYDED MKQMKNLSKE EFVLILRRRS  240
TGFARGSSKY RGVTLHKCGR WEARMGQFHG KKCVYLGLFD NEVEAARAYD MAAIKCNGRD  300
AVTNFEPSVY EGEVVFDPSS REMSDHNLDL SLRISAPPSN DTGSCCFRYK DCELPKKETT  360
VVENARSLPK ASKNLPTLSG IYPGFLASNQ EMVEEKKVEA DSLLKSSSWP WNVNGNNNKK  420
KNFATISEIT SVAASSGFDS SATITAFHIN QQQQQQQSHP VNNLCLTTPN KNSFHYYS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G041100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626222.10.0floral homeotic protein APETALA 2-like isoform X1
RefseqXP_021626223.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AMA91e-100AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2C9V3910.0A0A2C9V391_MANES; Uncharacterized protein
STRINGcassava4.1_007151m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-93AP2 family protein