PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G036200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 21606.4 Da PI: 8.6003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Manes.10G036200.1.p 50 FECKTCNRQFPSFQALGGHRASH 72 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.2E-8 | 48 | 72 | No hit | No description |
Pfam | PF13912 | 3.4E-13 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.2E-8 | 100 | 127 | No hit | No description |
Pfam | PF13912 | 5.6E-10 | 104 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.536 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MKRSFYEAEL ENSITMANCL MLLSHGRETQ FPSFEALKNS GVINSPSRVF ECKTCNRQFP 60 SFQALGGHRA SHKKPRLTGG GGDGSSETQS SSSSSSSAVA KPKTHECSVC GLEFAIGQAL 120 GGHMRRHRGA LNDQSMQLQQ GDGNTTSRSA QVVMPPIVKK SNSRRVLCLD LNLTPCENDL 180 ELFSHGKAPP NPMVIDCFF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G036200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626334.1 | 1e-147 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2C9V302 | 1e-145 | A0A2C9V302_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034304m | 1e-146 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 4e-35 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G036200.1.p |