PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G033300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 293aa    MW: 33402.3 Da    PI: 9.1105
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G033300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.2e-187991100
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+ ++ ++ ++g l +p+kf++++g+    s  ++l  +sg +W+v+l   ++ g ++l+kGW++F +   L+ g f++Fk++g+ +f
  Manes.10G033300.1.p   7 FFKIILH-STIQQGKLEIPRKFVRKYGNG--LSSPVILHVPSGAKWSVEL--LNCNGDVLLGKGWQDFSNYYSLDIGNFLLFKYEGNCQF 91 
                          6666655.4555667***********755..5557***************..9*********************************9999 PP

                          ..EEEEE-SS CS
                   B3  91 elvvkvfrks 100
                            +v +f+ks
  Manes.10G033300.1.p  92 --CVLIFDKS 99 
                          ..****9985 PP
2B346.85.5e-15198289298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fkv +++++  ++++++p  f++++ + ++++   ++ +     W+vkli   ++++ +l++GW  F ++n L +gD++vF+l++r+   
  Manes.10G033300.1.p 198 FKVVVKPYHWDHNNVSMPAGFFRRYFKCQTQN---VILQIADTLWSVKLIRPSRRCAATLSAGWHAFSRENALGVGDVCVFELIKRNL-- 282
                          6999999******************7554454...45566779******88888888**************************98544.. PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          l+v++fr
  Manes.10G033300.1.p 283 LNVSIFR 289
                          4888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-24699IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.888699IPR003340B3 DNA binding domain
CDDcd100174.55E-19697No hitNo description
Gene3DG3DSA:2.40.330.101.5E-24699IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-20799IPR003340B3 DNA binding domain
PfamPF023623.8E-15798IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-20193289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-17194289IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-14196289No hitNo description
PROSITE profilePS5086311.66197291IPR003340B3 DNA binding domain
SMARTSM010198.0E-9198291IPR003340B3 DNA binding domain
PfamPF023621.6E-12198289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEIAAHFFKI ILHSTIQQGK LEIPRKFVRK YGNGLSSPVI LHVPSGAKWS VELLNCNGDV  60
LLGKGWQDFS NYYSLDIGNF LLFKYEGNCQ FCVLIFDKSA LEIEYPCENI FNTKPNSDDL  120
HNTTIKENED DTSVEALDFP SQCKKMGGKS TFLHQSRKFM QSRRKKNDHG KVKSSHACSW  180
NSQALEDANN FITKYPSFKV VVKPYHWDHN NVSMPAGFFR RYFKCQTQNV ILQIADTLWS  240
VKLIRPSRRC AATLSAGWHA FSRENALGVG DVCVFELIKR NLLNVSIFRC VN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G033300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624764.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2C9V2S00.0A0A2C9V2S0_MANES; Uncharacterized protein
STRINGcassava4.1_013045m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-38B3 family protein