PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G031200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 323aa    MW: 34444.7 Da    PI: 9.3864
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G031200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-3965125262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Manes.10G031200.1.p  65 PETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 125
                          67899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3149114IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3268123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54469123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWEQQNQ QPGAGGENPQ LPLPPPPPGG GGGSSGAIRP GSMAERARLA  60
KIPQPETALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR  120
NKRSKGSSRS KSPTKAGSSS TSGLVSNSCT TDIIGHMVHP PPQLPILPPL HHLSKYNSTE  180
IGLNFFGIQP PVAAKSAGGM EFQIGSTSSG GAGGSLLSTG LVDQWRLQQV QQFPFFANLE  240
PPTGLYPYEG EGIEPPNYVG QLRLSKPLDS GVTQLASVKM EDNQGLNSSK NFLGISGNDQ  300
YWGGNAWTDI PGFTSSSTSH LL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G031200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625172.10.0dof zinc finger protein DOF3.6-like
SwissprotQ9M2U11e-69DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A2C9V4250.0A0A2C9V425_MANES; Uncharacterized protein
STRINGcassava4.1_011891m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-40OBF-binding protein 3