PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G029200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 733aa    MW: 82256.1 Da    PI: 6.2251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.73.3e-1193587291374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+av+++d ++a+ lL +++++asp+gd mqR+a+ f+ +L+ar+a+s++++yka+ +++ts    +++l+a++lf  ++P+
  Manes.10G029200.1.p 358 LRTLLTLCAQAVAADDRRNANDLLMQIRQNASPTGDGMQRVAHIFADGLEARMAGSGTQIYKAFMSKHTS---AADVLKAYHLFLAACPF 444
                          5789*************************************************************99999...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++  N++I++ +++++r+Hi+Df+i +G+QWp+L+q L+sR++gpp+lRiTg++ p++g   + ++eetg+rL+++A++++vpfef
  Manes.10G029200.1.p 445 KKLSNFFSNKTIMNVAQNAKRLHIVDFGILYGFQWPCLIQRLSSRENGPPELRITGIDFPHPGfrPAVRVEETGHRLSNYAKTFNVPFEF 534
                          *************************************************************9999************************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +a++++++++e+L+++++E+l+Vn+vl+l +llde+v +es+r+ vL+l+++++P+v++    +  ++s+ F +rf eal +ysalf
  Manes.10G029200.1.p 535 NA-IAQKWDTIKIEDLKLDRDEVLVVNCVLRLRNLLDETVVVESPRNIVLNLIQKMNPDVFITGIVNGTYSSPYFITRFREALFHYSALF 623
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+lea++pre  er+ +Er ++g+e++nv+acegaer er et+++W+ r+ +aGF+++pl++++ +++k  +++ + + + ++e+ ++l
  Manes.10G029200.1.p 624 DMLEANVPREVPERMLIERDIFGWEAMNVIACEGAERLERPETYKQWQFRILRAGFRQLPLNQEIFAEVKKKVNELYHKDFVIDEDCQWL 713
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          + gWk+r ++++ +W+
  Manes.10G029200.1.p 714 LKGWKGRIIYALASWK 729
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.416332709IPR005202Transcription factor GRAS
PfamPF035141.1E-116358729IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MVMDQPLTGL YGSVNGLKLN DETLSVNGLK SNDSFVQQIS ANNPPLPPDL NLALSNSVLS  60
LSKSQDGDSR EDFDFSDVVL KYINTMLMEE DIEEKSCMFQ ESSAALQAAE KSLYELIGEK  120
YPPPPTNCHS VPCLDQNHKN SYQKLDSNCF TYTSSSSSTS DHRCEYKPLK YDSQSGAQSS  180
HSYGNSTGVV VEGFVSSPVS TISEIFSDSG SIKQFKEGFE EASKFIPNGS LITDLKSNSL  240
FLKDLNKESK DVAVKVVEKP EIGYVPDESR KKKNPHPEDL DLEGERSNKQ SAIYTESTVS  300
SADFDTVLLS CGIIESAIPE AWQNGRSKNG QQNGQTKGTS VGKGRGKKQG SKRNMVDLRT  360
LLTLCAQAVA ADDRRNANDL LMQIRQNASP TGDGMQRVAH IFADGLEARM AGSGTQIYKA  420
FMSKHTSAAD VLKAYHLFLA ACPFKKLSNF FSNKTIMNVA QNAKRLHIVD FGILYGFQWP  480
CLIQRLSSRE NGPPELRITG IDFPHPGFRP AVRVEETGHR LSNYAKTFNV PFEFNAIAQK  540
WDTIKIEDLK LDRDEVLVVN CVLRLRNLLD ETVVVESPRN IVLNLIQKMN PDVFITGIVN  600
GTYSSPYFIT RFREALFHYS ALFDMLEANV PREVPERMLI ERDIFGWEAM NVIACEGAER  660
LERPETYKQW QFRILRAGFR QLPLNQEIFA EVKKKVNELY HKDFVIDEDC QWLLKGWKGR  720
IIYALASWKP DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-5036573025379Protein SCARECROW
5b3h_D9e-5036573025379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625599.10.0scarecrow-like protein 30
TrEMBLA0A2C9V4U90.0A0A2C9V4U9_MANES; Uncharacterized protein
STRINGcassava4.1_031802m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein