PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G019700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 424aa    MW: 45537.6 Da    PI: 5.1748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G019700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-1860105147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Manes.10G019700.1.p  60 KGPWSPEEDAVLTQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 105
                          79******************************.***********985 PP
2Myb_DNA-binding57.14e-18112156147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Manes.10G019700.1.p 112 RKPFTDEEDHIIISAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 156
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.39655106IPR017930Myb domain
SuperFamilySSF466892.52E-3157153IPR009057Homeodomain-like
SMARTSM007171.6E-1559108IPR001005SANT/Myb domain
PfamPF002497.3E-1760105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2761113IPR009057Homeodomain-like
CDDcd001679.87E-1562104No hitNo description
PROSITE profilePS5129425.924107161IPR017930Myb domain
SMARTSM007176.6E-16111159IPR001005SANT/Myb domain
PfamPF002499.0E-16112156IPR001005SANT/Myb domain
CDDcd001676.84E-12114157No hitNo description
Gene3DG3DSA:1.10.10.601.1E-23114160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MQNPTDDDVM ITEDEAKTPF ADSPTAGDSE VGGAAESVEL VGPAGGGSGG VGASLNSRVK  60
GPWSPEEDAV LTQLVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED  120
HIIISAHAIH GNKWAAIARL LPGRTDNAIK NHWNSTLRRR CMDQGRFKPG RSDAMEDGSH  180
DKTKASSEET LSVGDVNSFK LPEGRDVTID DQPDQEEDKA QADKVPQTNG FDFAAETQVH  240
PTLPRPKARI SAFSVYTPPS GPKTGYSRTV PTHGPLVQSS KTDFTACKFL EDIHVDPIVP  300
LQCGYGCCTT PSTGHPQSSL LGPEFVEYEE LPAFSSQELI SIATDLNNIA WIKSGLENSS  360
NGITGNTANY KISQGAVVGS QMGVPEQNLR NGHMPYEEGR NKLMGMMTDN LSTSACTAFC  420
NAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-40591606107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G019700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626018.10.0transcription factor MYB25
TrEMBLA0A2C9V2C90.0A0A2C9V2C9_MANES; Uncharacterized protein
STRINGcassava4.1_008330m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-109myb domain protein 109