PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G012200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-X1
Protein Properties Length: 884aa    MW: 98630.2 Da    PI: 8.3073
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G012200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.55e-07249267119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG HkC++ CH G+CppC+
  Manes.10G012200.1.p 249 CGTHKCKERCHDGDCPPCQ 267
                          ******************8 PP
2zf-NF-X117.49.4e-06430455120
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                          CG      +HkC ++CH+G C pCp+
  Manes.10G012200.1.p 430 CGkrlrckNHKCPAPCHRGACAPCPL 455
                          777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.3E-679157No hitNo description
PROSITE patternPS01359084150IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.03784151IPR001841Zinc finger, RING-type
CDDcd060082.89E-5185233No hitNo description
PfamPF014220.0067197214IPR000967Zinc finger, NF-X1-type
SMARTSM004380.17197215IPR000967Zinc finger, NF-X1-type
CDDcd060084.98E-9239287No hitNo description
PfamPF014223.7E-5249266IPR000967Zinc finger, NF-X1-type
SMARTSM004383.1E-4249268IPR000967Zinc finger, NF-X1-type
CDDcd060087.22E-9292335No hitNo description
PfamPF014220.024302320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0032302321IPR000967Zinc finger, NF-X1-type
CDDcd060083.18E-8346395No hitNo description
PfamPF014220.58356375IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3356376IPR000967Zinc finger, NF-X1-type
CDDcd060081.36E-7399447No hitNo description
PfamPF014220.0054409426IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15409428IPR000967Zinc finger, NF-X1-type
CDDcd060083.88E-11426474No hitNo description
PfamPF014220.0058430454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.01436455IPR000967Zinc finger, NF-X1-type
SMARTSM0043873493514IPR000967Zinc finger, NF-X1-type
PfamPF0142229503512IPR000967Zinc finger, NF-X1-type
PfamPF0142249522531IPR000967Zinc finger, NF-X1-type
PfamPF014220.15604614IPR000967Zinc finger, NF-X1-type
SMARTSM0043817604634IPR000967Zinc finger, NF-X1-type
SMARTSM004380.48647665IPR000967Zinc finger, NF-X1-type
PfamPF014222.4648664IPR000967Zinc finger, NF-X1-type
SMARTSM004384.6710731IPR000967Zinc finger, NF-X1-type
PfamPF0142216711724IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MSSANYQHHF SDSDSGSGSD PDQSNPESHH GHRHCHTDFS NSIFKSYFEH TTNQSPSSTS  60
PPTPHDLSKI QSFLNSSSSG ALSCLICLER IKPSDPTWSC TSLCYDVFHL LCIQSWARQA  120
SDLSAYRAAT RLPISPDKAA ETSTWNCPKC RSVYTKSQIP KTYFCFCGKV ENPPNDNPWI  180
LPHSCGEVCD RPLKNSCGHY CLLLCHPGPC ASCPKLVKAK CFCGKIEDAK RCGFKLFSCN  240
NLCGKLLDCG THKCKERCHD GDCPPCQARG LYGCYCGRKK EEKKCCERGF QCENPCERLL  300
GCGKHVCERG CHSGECGQCP LQGKRTCPCG KNVYEGMACD VAVPLCGGTC DKMLSCGLHR  360
CHERCHRGGC IETCRLVVMK SCRCGGLKKE VPCYQDLTCE RKCQRVRDCG RHACKRRCCD  420
GDCPPCGEIC GKRLRCKNHK CPAPCHRGAC APCPLMVTIS CACGETHFEV PCGTEMNQKP  480
PRCRKLCGIP PLCRHGSYKK PHRCHYGACP SCQLLCEEEY PCGHTCKLRC HGPRPPPNPE  540
FTLKPKKKKP NHQIECTPGS PCPPCPELVW RSCIGQHLGA ERMIVCSSKA LFSCDNLCGN  600
PLPCGNHYCT KTCHALISQS QKSLAQCIGE PCEECHLPCD KERKPTCLHH CPLSCHPGEC  660
PPCKVLVKRA CHCGSMVHVF ECIYYNSLSE KEQMSVRSCG GSCHRKLPNC THLCPEICHP  720
GQCPSPDKCS KKVTVRCQCQ TLKKEWPCQD VQAAYHNSGR DPKDISKNHF GIGLLPCNSD  780
CKSKVKVVDQ ELHLRKSKDL EEKEPDTEKN TSKRRKRRER AKETKQISKF QKLVATMKWF  840
LLLVILVVIL VAASYSGYKG LMWLSDWMNE VEEQRLRRSY PRI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G012200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624768.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2C9V4B20.0A0A2C9V4B2_MANES; Uncharacterized protein
STRINGcassava4.1_001412m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors