PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G011700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 668aa MW: 72539.4 Da PI: 6.6553 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 266 | 286 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg Manes.10G011700.1.p 266 PCPEFRK-GACQKGDSCEYAHG 286 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 6.84E-15 | 55 | 151 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.9E-15 | 76 | 153 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.565 | 76 | 151 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.603 | 76 | 100 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 1.5E-9 | 76 | 145 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.8E-4 | 76 | 106 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.58E-13 | 78 | 174 | No hit | No description |
SMART | SM00248 | 0.0017 | 111 | 143 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.927 | 111 | 146 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.8E-5 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-5 | 266 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 293 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.15 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MCSGSKGETF PANPTMEVES RISKDGILCK CSVLLELSAS DDLVGFKSEI EEKGLDVDEA 60 SYWYGRRIAS KKMGLEERTP LMIAAMFGST NVLKYIIDTG KVDVNRACGW DKVTALHCAV 120 AGGSSSLVEV VKLLLDASAD VNCFDANGNK PKDLLNPSLK SPCNSRRKLV ELLLKGESPS 180 EDEEEKLIMM SLPAKEGAEK KEYPIDVSLP DINNGIYGTD EFRMYCFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGACQKGDS CEYAHGVFES WLHPAQYRTR 300 LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSIS VSSMDMATLT PLSLGSPSLT 360 LPAVSTPPMS PLTAASSSPK SGGLWQNKVN LTPPALQLPG SRLKTALCAR DLDLEMKLLG 420 LENHINQLQQ QQLMDDLSGL SSPSCWSKDF NGIGDLKPTN LDDVFGSLDL SLLSPLQGMS 480 LNPSTPTQLQ SPTGLQIRQN MNQLRSSYPA NLSSTSLRKP ASHGFDSSAA VAAAVMNSRS 540 SAFAKRSHSF IDRGAATNRF GITAAANSVS MMSSNLSDWS SPDGKLDWGV QGDELNKLRK 600 SASFGFRSTN STTAANLTLS KVDEPDVSWV NSLVKDVPTA GFGVKGVHES VPPWMEQLYI 660 EQEQMVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G011700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625533.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like isoform X1 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2C9V2D5 | 0.0 | A0A2C9V2D5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003107m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G011700.1.p |