PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G010300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 35806.3 Da PI: 6.7002 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.6e-18 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Manes.10G010300.1.p 59 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAAIILYG 108 59****999.**********954...5**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.40E-20 | 59 | 116 | No hit | No description |
PROSITE profile | PS51032 | 22.418 | 59 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-21 | 59 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.5E-38 | 59 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 59 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-12 | 59 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDDSSLHHPP QTTTTTAPAA PSITIATTSD TNSDTSNNSS SDNSRKCKGR GGPDNSKFRY 60 RGVRQRSWGK WVAEIREPRK RTRKWLGTFS TAEDAARAYD RAAIILYGSR AQLNLQPSNF 120 SSAQSSSSSS RGSHSSSTQT LRPLLPRPSG FGFTFSLSAS MPSPALTVAP AAASAASGLD 180 PYGVFNHHHH PNVVGSGVLC PSNIVQNPQE QLMLHHQNPL PDVCNFGDSC STLPITSYQN 240 LNYDYDDHNR YHHQQQQQEL GGGGLYEDIS SLVGSVGSSL SLSSNTQPVI APAGQDPVMH 300 VGPGSPSVWP LAIDEYPPPS IWDYEDPSLF DL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 60 | 115 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G010300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626610.1 | 0.0 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A2C9V286 | 0.0 | A0A2C9V286_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033353m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8847 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 2e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G010300.1.p |