PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G010200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19092.7 Da PI: 8.6826 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132 | 2.4e-41 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l+++pe +red+++sl+yeAear+rdPvyG++g i lq++++ql Manes.10G010200.1.p 11 SCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEGQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMAQL 100 6***************************************************************************************** PP DUF260 91 kaelallkee 100 + +l+ ++++ Manes.10G010200.1.p 101 QLDLSIARAR 110 ***9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.652 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-41 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MRSHEPRSSS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILTEVP 60 EGQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMAQL QLDLSIARAR LARYTANSSS 120 STVILNDRSR MTTFSELPAA CGGLSECFGQ NYSEFSQDGL FNDFSQFPHI F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-49 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-49 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G010200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626383.1 | 1e-125 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 3e-63 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A2C9V3U2 | 1e-124 | A0A2C9V3U2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029097m | 1e-124 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-65 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G010200.1.p |
Publications ? help Back to Top | |||
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