PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G001100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bZIP
Protein Properties Length: 364aa    MW: 40428.1 Da    PI: 6.2962
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G001100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10162210553
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                          kr++r + NR +A rs +RK  ++ eLe+kv++L++e ++L  +l   +
  Manes.10G001100.1.p 162 KRAKRIIANRQSAARSKERKARYMSELEKKVQTLQTEATTLSAQLTLFQ 210
                          9****************************************99887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-16158222IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.588160223IPR004827Basic-leucine zipper domain
PfamPF001708.3E-9162210IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-11162213No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-11162216No hitNo description
CDDcd147031.63E-23163212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQDPPNPNKN INPKTNPTPE TQNFPYGQAQ PFYFRSYCHR RAHSEVHFRL PEDLDLVSDP  60
FEGPSGSTFD ELGSEDDIFC TYMDIEKLGS RPDEGPSGLK PDNAVNGSSG GGGGDEVDGE  120
KNVRPRHRYS NSVDGSSIME SIEAKKAMAP DKLAELWTVD PKRAKRIIAN RQSAARSKER  180
KARYMSELEK KVQTLQTEAT TLSAQLTLFQ RDTTGLSTEN TELKLRLHAM EQQAQLRDAL  240
NEALKKEVER LKIATGEMMT PTDHYNLGMH HVPYTQSSYF QPQSQTRPVN TQNMQMPPQF  300
HPFQSNIPTP NQPMGAASHS HAFPEMLPQD PLGRMQGLDI GSRSTLLVKS EGPSISASES  360
SSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G001100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625484.10.0transcription factor RF2b
SwissprotO228731e-122BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2C9V2200.0A0A2C9V220_MANES; Uncharacterized protein
STRINGcassava4.1_010314m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-119bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]