PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G187700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 354aa    MW: 38631.2 Da    PI: 5.3757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G187700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.86.1e-2843137186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rWt+qe+l+Li++++  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e+  ++e++s +++
  Manes.09G187700.1.p  43 RWTRQEILVLIQGKKVAENRVRRGRtvgmafgsvQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESHIRDETESFWAM 132
                          8**********************98888889999*********************************************99999999999 PP

             trihelix  82 fdqle 86 
                           ++l+
  Manes.09G187700.1.p 133 RNDLR 137
                          99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-1243133No hitNo description
PROSITE profilePS500906.443109IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-543108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVLEQQLNLG QNTIDGHPTN GVDIRPLSID GGDDGSKAPR LPRWTRQEIL VLIQGKKVAE  60
NRVRRGRTVG MAFGSVQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DYKKIKEWES  120
HIRDETESFW AMRNDLRREK KLPGFFDREV YDILDGVGDV SAVVPGLALA LAPSREPAED  180
VEAVFDSGRS AAAEDGLFSD FEQEEAGGSP EKEPTAAVSA AKEVPPIKAA AAAAGIAAPI  240
PLSEKQYHPA LEADEAQGTT NEKQPTSNPE GGSASHESRK RKRFTTDGDE EAINVQNQLI  300
DILEKNGKLL TAQLEVQNTN FQLEREQRKE HADGLVAVLN KLADALGKIA DKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G187700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623243.10.0trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-126ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2C9VC180.0A0A2C9VC18_MANES; Uncharacterized protein
STRINGcassava4.1_010729m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-125Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]