PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G174900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GATA | ||||||||
Protein Properties | Length: 158aa MW: 17653.3 Da PI: 10.3101 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.7e-20 | 25 | 59 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++ Manes.09G174900.1.p 25 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 59 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.6E-16 | 19 | 71 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.75E-14 | 20 | 60 | No hit | No description |
PROSITE profile | PS50114 | 12.519 | 23 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-16 | 23 | 59 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.61E-14 | 24 | 61 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 25 | 50 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-18 | 25 | 59 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MMDDLWERKL LHDDEDKNIE MKKSCTDCKT TKTPLWRGGP AGPKSLCNAC GIRYRKKRRA 60 MLSLDKDKES EKKKKRSHST TTTTTLTTTT ATSASSVNNG NGLGDSLKMS LIEVGEKMMF 120 ERSSIVRKQR CQRRRRLGEE EQAAFSLMAL SCGSVLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 75 | KRRAMLSLDKDKESEKKKKR |
2 | 65 | 74 | KDKESEKKKK |
3 | 73 | 77 | KKRSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G174900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622601.1 | 1e-112 | GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 1e-34 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2C9VBX1 | 1e-110 | A0A2C9VBX1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025356m | 1e-94 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-17 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G174900.1.p |
Publications ? help Back to Top | |||
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