PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G169000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 513aa    MW: 55952.6 Da    PI: 8.8561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G169000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27.1e-0693115123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Manes.09G169000.1.p  93 FVCEICNKGFQREQNLQLHRRGH 115
                          89*******************88 PP
2zf-C2H213.90.00016169191123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Manes.09G169000.1.p 169 WKCEKCSKKYAVQSDWKAHTKTC 191
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.16E-792115No hitNo description
SMARTSM003550.003493115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07493115IPR007087Zinc finger, C2H2
PfamPF121712.7E-593115IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM0035596134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.16E-7164189No hitNo description
SMARTSM00355130169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSNITGEGES FSSGNTTAVG EVEVHQQQEQ EQEHLNHLNS IASRTTTTAN GSTAEENQPT  60
TVFKKKRSLP GNPDPSAEVI ALSPNTLVAT NRFVCEICNK GFQREQNLQL HRRGHNLPWK  120
LRQRTSKEIK KRVYVCPEPS CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV  180
QSDWKAHTKT CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL TEENNKANQG LLSNMEENLH  240
GQIPNLISMP VNKASNFNHL DTKIPLSLPH ELMAMQPKNS GTMLSSSSTT SLFGGRAMSN  300
TSTIFEGNNG HLAAGTSASM SATALLQKAA QMGATATNSN LVTSPMTHKS FVTSMAPSTF  360
GQLQTSNDQS QVTAAEGNGG LIDQFFSGII ENSAANHMGM FNGVLAQNSA FFKNIEHGSS  420
NNKSFFHGVN SNPGLRIPST AGANNNPSGL ARFHGDVMTV DFLGVGGSRQ RNIHEQQKQE  480
MEFRGIGDPR IHQGLGHFEQ QAAALEKPMW DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34165234370Zinc finger protein JACKDAW
5b3h_F4e-34165234370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G169000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622335.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-111IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2C9VBI30.0A0A2C9VBI3_MANES; Uncharacterized protein
STRINGcassava4.1_005794m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.17e-98indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]