PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G165000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 28910.6 Da PI: 6.3676 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.6 | 2.1e-54 | 77 | 180 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw +q ++k+ dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd Manes.09G165000.2.p 77 QLQTFWVNQyqkLDKVVDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 166 89******9888899*************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l Manes.09G165000.2.p 167 IFDFLVDIVPREDL 180 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.2E-32 | 68 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-21 | 99 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.8E-38 | 100 | 177 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDQQGHGHPP ATGIMSTAGQ MPYGTNPYQM NQMSSAQNPG SVGTVQSAGQ PAGSQLAQHQ 60 LAYQQLHHQQ QQQLQQQLQT FWVNQYQKLD KVVDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVVFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 180 KDEVLASIAN ETMPVGGPAD ALPYGYIPPQ HVAQDGTPGM IIGRPMMDSA IYAQHSHSYM 240 AQQMWPHQGS EEQQSPSGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-60 | 83 | 177 | 1 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G165000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623996.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_021623997.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_021623998.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_021623999.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 4e-86 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A251K8E6 | 0.0 | A0A251K8E6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014289m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 4e-83 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G165000.2.p |