PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G155000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 736aa    MW: 80878.7 Da    PI: 6.2225
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G155000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.31e-15448486341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk  
  Manes.09G155000.2.p 448 CKRCNCKRSKCLKLYCECFAAGLYCIEPCSCQDCFNKPA 486
                          89**********************************975 PP
2TCR52.68.9e-17532571140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN+ 
  Manes.09G155000.2.p 532 RHKRGCNCKKSSCLKKYCECFQGGVGCSPNCRCEGCKNTF 571
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-18446487IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.159447572IPR005172CRC domain
PfamPF036383.1E-11449484IPR005172CRC domain
SMARTSM011141.9E-17532573IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-12534570IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MELNTPNKSH LISTPLSQFE DSPVFNYINN LSPIELVKSV HSSDQSLNSL AFSSPPSVFA  60
SPKLVSQRDT RSFLTRRQFL DPSKHGLSQV KDANSTSEGV SAAVKLSNSS AEQLGRLASS  120
SSAKEVTAEP LNEQLELAIE LPEALKCDIA SPDKNIAPLD AIRTDTETEK GDKSNEKHFS  180
YESEKNLRKI CRIEQSEDEA GVDWVTLVSN VADAFYFESS VIEEHSEEQK LMVDPGTISF  240
ISNVLQIPQD NTNELENSND YSEQETGETG TQSTGKNKEA DKMPAVLSGT LLNKLVVNDV  300
AAKVDVKGKK RESSCKQNRI RRLVFEMAGA HKKETACQES NAYPISVQSD SEVDHIEKHS  360
TPRISMLSRK GIGLHLNALA TTSSDCKVVK IATLSSTRQE TKTGLVLCDN EDKVIENAPQ  420
TSTDVSDDFG ISSPKVKRPK MEHVGAACKR CNCKRSKCLK LYCECFAAGL YCIEPCSCQD  480
CFNKPAHEDT VLETRKQIES RNPLAFAPKV IRSTEFASEF GDETNKTPAS ARHKRGCNCK  540
KSSCLKKYCE CFQGGVGCSP NCRCEGCKNT FGSKNGVEEN ELEGVEPEEL EKKFSDVTSR  600
DMIEEGEEEH ADRPIPSETA RSSIQLPMTL GVRFSRSQPA FGASSQMCPS QKLGKEIFRQ  660
PKFETHLQAI PEEETPEVLN SSCPPANGVK STSPNCKRIS PPHQGFGSSA IWRSSRKLIL  720
RSVPPFPSLN SPHQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1744956912120Protein lin-54 homolog
5fd3_B3e-1744956912120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G155000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622552.10.0protein tesmin/TSO1-like CXC 3 isoform X2
TrEMBLA0A2C9VCM20.0A0A2C9VCM2_MANES; Uncharacterized protein
STRINGcassava4.1_024923m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.19e-91TESMIN/TSO1-like CXC 2