PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G155000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 737aa    MW: 81006.8 Da    PI: 6.2225
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G155000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.31e-15449487341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk  
  Manes.09G155000.1.p 449 CKRCNCKRSKCLKLYCECFAAGLYCIEPCSCQDCFNKPA 487
                          89**********************************975 PP
2TCR52.68.9e-17533572140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN+ 
  Manes.09G155000.1.p 533 RHKRGCNCKKSSCLKKYCECFQGGVGCSPNCRCEGCKNTF 572
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-18447488IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.159448573IPR005172CRC domain
PfamPF036383.1E-11450485IPR005172CRC domain
SMARTSM011141.9E-17533574IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-12535571IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MELNTPNKSH LISTPLSQFE DSPVFNYINN LSPIELVKSV HSSDQSLNSL AFSSPPSVFA  60
SPKLVSQRDT RSFLTRRQFL DPSKHGLSQV KDANSTSEGV SAAVKLSNSS AEQLGRLASS  120
SSAKEVTAEP LNEQLELAIE LPEALKCDIA SPDKNIAPLD AIRTDTETEK GDKSNEKHFS  180
YESEKNLRKI CRIEQSEDEA GVDWVTLVSN VADAFYFESS VIEEHSEEQK LMVDPGTISF  240
ISNVLQIPQD NTNELENSND YSEQETGETG TQSTGKNKEA DKMPAVLSGT LLNKLVVNDV  300
AAKVDVKGKK RESSCKQQNR IRRLVFEMAG AHKKETACQE SNAYPISVQS DSEVDHIEKH  360
STPRISMLSR KGIGLHLNAL ATTSSDCKVV KIATLSSTRQ ETKTGLVLCD NEDKVIENAP  420
QTSTDVSDDF GISSPKVKRP KMEHVGAACK RCNCKRSKCL KLYCECFAAG LYCIEPCSCQ  480
DCFNKPAHED TVLETRKQIE SRNPLAFAPK VIRSTEFASE FGDETNKTPA SARHKRGCNC  540
KKSSCLKKYC ECFQGGVGCS PNCRCEGCKN TFGSKNGVEE NELEGVEPEE LEKKFSDVTS  600
RDMIEEGEEE HADRPIPSET ARSSIQLPMT LGVRFSRSQP AFGASSQMCP SQKLGKEIFR  660
QPKFETHLQA IPEEETPEVL NSSCPPANGV KSTSPNCKRI SPPHQGFGSS AIWRSSRKLI  720
LRSVPPFPSL NSPHQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1745057012120Protein lin-54 homolog
5fd3_B4e-1745057012120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G155000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622550.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A2C9VB470.0A0A2C9VB47_MANES; Uncharacterized protein
STRINGcassava4.1_024923m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-90TESMIN/TSO1-like CXC 2