PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.09G154300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 561aa MW: 64196 Da PI: 8.261 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.6 | 2.5e-16 | 91 | 147 | 2 | 63 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 W+++evlaL+++r++me+++ + We+vs+k+ e gf+rs+++Ckek+e+ n+++ + Manes.09G154300.1.p 91 WSNDEVLALLRIRSSMENWFPEF-----TWEHVSRKLGELGFKRSAQKCKEKFEEENRYFNN 147 ********************998.....9******************************976 PP | |||||||
2 | trihelix | 96.6 | 2.2e-30 | 437 | 523 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+evlaLi++r++ + + ++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Manes.09G154300.1.p 437 RWPKDEVLALINLRSSFYGSNEdkEATVKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPYFHQLS 523 8**************7655555216789********************************************8.78889*******95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.2 | 87 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.3E-10 | 89 | 151 | No hit | No description |
PROSITE profile | PS50090 | 6.26 | 90 | 142 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.19E-13 | 91 | 146 | No hit | No description |
SMART | SM00717 | 0.006 | 434 | 498 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.94E-23 | 436 | 503 | No hit | No description |
Pfam | PF13837 | 8.8E-20 | 436 | 523 | No hit | No description |
PROSITE profile | PS50090 | 6.969 | 437 | 496 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 561 aa Download sequence Send to blast |
MFEGVPDQFH QFTVSRTSLP LPLSFPSLHG SSASFDLYTS HHQHLPLQQP TFLQQTAPST 60 SKNQDKQENC MVVVNLESER ERSMHESIDP WSNDEVLALL RIRSSMENWF PEFTWEHVSR 120 KLGELGFKRS AQKCKEKFEE ENRYFNNNIN YSKNYKVFGE IEELYRDDNH NSQGIALGKN 180 KTMDKAAEEE GKMEQNVEED SRIDQTVGNL DGENGKWVDK SKSKKRKRQQ KFEMFMGFCE 240 DIISKIMAQQ EEMHNKLLED MVKRDEEKLA REEAWKKQEM DKINKELELR AQAQALTGDR 300 QATIVNFLKK FSPSTASCVQ ILGETSVQDL LKRPNNSNPS TSSSLVLPQN PNNKQSKSEA 360 PMSTMIDFGH QNLSSLPENL APQNPSSTLV RSSSTSSSQC PQTKTPSYPN SQSNRLQTVT 420 VQRKPASNGK AEDLGKRWPK DEVLALINLR SSFYGSNEDK EATVKAPLWE RISQGMLELG 480 YKRSAKRCKE KWENINKYFR KTKDVNKKRS VDSRTCPYFH QLSTLYNQGT LGVPHSELPE 540 KLPLAASSLE KPPYLEQANY * |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.09G154300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622549.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
TrEMBL | A0A2C9VBA9 | 0.0 | A0A2C9VBA9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032462m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28300.1 | 1e-100 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.09G154300.1.p |