PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G143800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 387aa MW: 43610.7 Da PI: 6.8449

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G143800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.2e-56	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP dee++++yL++kv ++ ++ +i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg+r+nrat++gyWkatgkdk Manes.09G143800.1.p 16 LPPGFRFHPADEEIITHYLTEKVMNSCFSS-CAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGTRTNRATEAGYWKATGKDK 104 79***********************988.67***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ k+ lvg+kktLvfy+grapkgekt+Wvmheyrle Manes.09G143800.1.p 105 EIYKGKNCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 99999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-62	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.351	16	167	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEGSVVVNKG EDLVDLPPGF RFHPADEEII THYLTEKVMN SCFSSCAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGTRTNR ATEAGYWKAT GKDKEIYKGK NCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSYYT LPKASKDEWV VCRVFHKSTG IKKTSIQDLL 180 RVNSFGDEFL DYSSLPPLMD PPQSSRPGSS SFNDEDDDEF KAITSKSLGG NYMPHLSTTM 240 VNNNQSYLHQ QQLPNSSYQT PSSVFYPQIP ASNPFLTFQT TPNLASYFPN SIFGGNDQTH 300 LIRSLAANSD TSVQQKKHCK LEQFSSNNQS VATHSQDTGL STDRNTTTEI SSVVSKHEIR 360 SNKVYDDLEG PSSVGAIADF EGLWDY*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEGSVVVNKG EDLVDLPPGF RFHPADEEII THYLTEKVMN SCFSSCAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGTRTNR ATEAGYWKAT GKDKEIYKGK NCLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEY RLEGKFSYYT LPKASKDEWV VCRVFHKSTG IKKTSIQDLL  180
RVNSFGDEFL DYSSLPPLMD PPQSSRPGSS SFNDEDDDEF KAITSKSLGG NYMPHLSTTM  240
VNNNQSYLHQ QQLPNSSYQT PSSVFYPQIP ASNPFLTFQT TPNLASYFPN SIFGGNDQTH  300
LIRSLAANSD TSVQQKKHCK LEQFSSNNQS VATHSQDTGL STDRNTTTEI SSVVSKHEIR  360
SNKVYDDLEG PSSVGAIADF EGLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-52	14	173	18	174	NAC domain-containing protein 19
3swm_B	4e-52	14	173	18	174	NAC domain-containing protein 19
3swm_C	4e-52	14	173	18	174	NAC domain-containing protein 19
3swm_D	4e-52	14	173	18	174	NAC domain-containing protein 19
3swp_A	4e-52	14	173	18	174	NAC domain-containing protein 19
3swp_B	4e-52	14	173	18	174	NAC domain-containing protein 19
3swp_C	4e-52	14	173	18	174	NAC domain-containing protein 19
3swp_D	4e-52	14	173	18	174	NAC domain-containing protein 19
4dul_A	4e-52	14	173	15	171	NAC domain-containing protein 19
4dul_B	4e-52	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G143800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605216	0.0	KR605216.1 Manihot esculenta NAC transcription factors 78 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622454.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-113	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0M4FBT5	0.0	A0A0M4FBT5_MANES; NAC transcription factors 78
STRING	cassava4.1_029652m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-116	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Manes.09G143800.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]