PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G142300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 421aa    MW: 46862.6 Da    PI: 7.5001
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G142300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.8e-3446100155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Manes.09G142300.2.p  46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.01443103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-3144101IPR009057Homeodomain-like
SuperFamilySSF466898.96E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-2346101IPR006447Myb domain, plants
PfamPF002495.0E-104899IPR001005SANT/Myb domain
PfamPF143791.9E-23147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MYHHHQHQGK SIHSSSRMPI PPERHLLLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQAVS RSSKIGANAV  120
AVDRMSEANV THLNNLSIGT QTNKNLHISE ALQMQIEVQR RLQEQLEVQR HLQLRIEAQG  180
KYLQAVLEKA QETLGRQNLG TVGLEAAKVQ LSELVSKVSA QCLNSAFSEL KELQGLCPQQ  240
TQTTPPTDCS IDSCLTSCEG SQKEQETHNT GMGLRPYNGN AFLESKEMAE DHMLHPTELK  300
WVENLRDSKM FLSPMGNNTE SRIFSTERSS SNLAMRVGLQ GESGKASTSF TEERYKGRND  360
DDNFPDQTNK RTDSVKLQHD NISTGYRLPY FATKLDLNSH DEIDAASNCK QLDLNGFSWN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-2145102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G142300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624057.10.0myb-related protein 2-like
SwissprotQ9SQQ91e-160PHL9_ARATH; Myb-related protein 2
TrEMBLA0A251K7B90.0A0A251K7B9_MANES; Uncharacterized protein
STRINGcassava4.1_008434m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-141G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]