PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G137400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 26637.9 Da PI: 6.899 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.8 | 2.8e-36 | 43 | 141 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq e Manes.09G137400.1.p 43 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQAEL 132 7***********************9989************************************************************99 PP DUF260 90 lkaelallk 98 + ++++l++ Manes.09G137400.1.p 133 AMVQTQLIN 141 998887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.308 | 42 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-36 | 43 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAEPQCDATS DTRRKGIGKR ASAVPVESQS VAETGLPVPA VAPCGACKFL RRKCISGCIF 60 APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPMNRRHEA VVTISYEAQA RLSDPVYGCV 120 STILALQQQA ELAMVQTQLI NSRFAMANVL ENSQQQQQQQ QQLHHQHQQV SLLQPAYSNN 180 SSASTNLINM SNFTSNFELV TDTAPSSHSL EPLHLSRPSH DEEDDEEESR IPGIFADVIL 240 HRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-33 | 40 | 149 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-33 | 40 | 149 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G137400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621992.1 | 1e-156 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 2e-75 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2C9VBU3 | 1e-179 | A0A2C9VBU3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026878m | 1e-180 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 8e-74 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G137400.1.p |