PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G136300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 501aa MW: 54293.6 Da PI: 6.0226

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G136300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Manes.09G136300.1.p 102 PDKIIPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	95	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MNGSDMPLSK DPAFKLFGRK IPVPDTQIPA KPPSQNSCSE ITKGETDRLN EDNSGEPDKS 60 AVSGQGKEEN QTPVHETQGT SKPEEDQVET NSVDQEKVFK KPDKIIPCPR CNSLDTKFCY 120 FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRQLLV SSEGVPITRV 180 DNSDSANHQL VSSVESATTL RPSTTGNGMV LKFGSEAPLC ESMETVLNLE DQKKYAEMSS 240 VNSRDNIEEP SSCGSSMTAS SCRINELPET VAQKELVGLP GSPNELTVPQ PLQCYPVPPW 300 VCPWNPGWNN ATSMAAAHHS VGHPSMPNSI SSSQVQWCPT PVLAIPGFCP PNVPLQFVPA 360 SYWGCMPVWD AGTRNTSLGE SNGCSSPSSS TTTSCCSGNG SPNLGKHSRD SNLMDEEKPE 420 NCILVPKTLR IDDPNEAAKS PLWTTLGLKL DQKSPVPKGT IFKPFENKAE GKEGNVSDSS 480 HILEANPAAL SRSHTFQESS *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MNGSDMPLSK DPAFKLFGRK IPVPDTQIPA KPPSQNSCSE ITKGETDRLN EDNSGEPDKS  60
AVSGQGKEEN QTPVHETQGT SKPEEDQVET NSVDQEKVFK KPDKIIPCPR CNSLDTKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRQLLV SSEGVPITRV  180
DNSDSANHQL VSSVESATTL RPSTTGNGMV LKFGSEAPLC ESMETVLNLE DQKKYAEMSS  240
VNSRDNIEEP SSCGSSMTAS SCRINELPET VAQKELVGLP GSPNELTVPQ PLQCYPVPPW  300
VCPWNPGWNN ATSMAAAHHS VGHPSMPNSI SSSQVQWCPT PVLAIPGFCP PNVPLQFVPA  360
SYWGCMPVWD AGTRNTSLGE SNGCSSPSSS TTTSCCSGNG SPNLGKHSRD SNLMDEEKPE  420
NCILVPKTLR IDDPNEAAKS PLWTTLGLKL DQKSPVPKGT IFKPFENKAE GKEGNVSDSS  480
HILEANPAAL SRSHTFQESS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G136300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624402.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2C9VAS0	0.0	A0A2C9VAS0_MANES; Uncharacterized protein
STRING	cassava4.1_028076m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-66	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Manes.09G136300.1.p