PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G127800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 369aa    MW: 40939.8 Da    PI: 5.3792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G127800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+d+++++G g+W++ ++  g++R++k+c++rw +yl
  Manes.09G127800.1.p 16 KGPWTPEEDKKLIDYIQEHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 63
                         79********************************************97 PP
2Myb_DNA-binding55.99.7e-1869114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  Manes.09G127800.1.p  69 RGKFSEEEEQIIINLHAVLGNK-WSAIAQNLP-GRTDNEIKNFWNTHL 114
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1121163IPR017930Myb domain
SuperFamilySSF466891.8E-3113110IPR009057Homeodomain-like
SMARTSM007175.6E-161565IPR001005SANT/Myb domain
PfamPF002492.9E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-251770IPR009057Homeodomain-like
CDDcd001678.47E-131863No hitNo description
PROSITE profilePS5129427.63864118IPR017930Myb domain
SMARTSM007173.6E-1768116IPR001005SANT/Myb domain
PfamPF002491.4E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2871118IPR009057Homeodomain-like
CDDcd001673.94E-1371114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMGKSSPFED ENGLKKGPWT PEEDKKLIDY IQEHGHGSWR ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSEEEEQII INLHAVLGNK WSAIAQNLPG RTDNEIKNFW NTHLKKKLLQ  120
MGIDPVTHRP RTDLNLLSNL QQLLAAANLS NLMNNVYWDN GLRPLQNNNT DTTQLAKLQL  180
LNNMILQFLS SSSSPFPNME AAATNILGPN SVYEYLTMIS QLEGLLSSGA GQAPAGYNSL  240
SPQDLSRFLP SFPNVETQQP PVCDEYHPMK DSKVGCNGNG QLGCDSYGVS ASNSPLPPLV  300
SASPDDHHHC PTMNQTESCN RINPNDTSNP SSTSTTFEAW GDLMDDEASD TYWREIIDQA  360
SSQPWPLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31141185108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G127800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347271e-73KM034727.1 Jatropha curcas clone JcMYB107 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624241.10.0transcription factor MYB39-like
SwissprotQ9S9Z21e-83MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A251KN330.0A0A251KN33_MANES; Uncharacterized protein
STRINGcassava4.1_031285m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-91myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]