PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G117700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 889aa    MW: 97981.6 Da    PI: 7.0952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G117700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.2e-18331431199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Manes.09G117700.2.p 331 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 419
                          99**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                            e++lv++++++
  Manes.09G117700.2.p 420 -PEGKLVMGFRKA 431
                          .777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-30322438IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19328433IPR015300DNA-binding pseudobarrel domain
CDDcd100179.69E-22329430No hitNo description
PROSITE profilePS5086311.011331432IPR003340B3 DNA binding domain
PfamPF023621.1E-15331431IPR003340B3 DNA binding domain
SMARTSM010191.1E-19331432IPR003340B3 DNA binding domain
PROSITE profilePS5105013.655560610IPR011124Zinc finger, CW-type
PfamPF074961.1E-8565607IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MSELMLRMES KTCMNALCGA STSSGWRKGW PLRSGEFANL CDKCGSAYEQ SIFCDMFHSK  60
DSGWRNCASC GKRLHCGCIA SIFLLELLDH GGGVNCISCT KSSGVNSVMG NEKPNGFGTS  120
KGDDIGELQS ADNQLDGERK LMQSGCTTEG IGTRDLLQLQ NEETSGSFRQ MKQEDNVAPR  180
AEIGITSFSN FNQASNGLSQ NSKPEIHKST IAAKELYESL AQTNLSITLG SPLGNPNSFP  240
GAVVDERGQS KAPSPLQQGS RSRHLLPKPP KSALATGLES NVGMVSQIRV ARPPTEGRGR  300
NQLLPRYWPR ITDQELQQIS ADSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI  360
SQPEGLPLRI QDVKGKDWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP  420
EGKLVMGFRK ASNNMAMQSI KGSTETHLSA LSKHLHSANG DTSWHKFEKH EERMRESLLL  480
PSLLVPERKR TRNIGSKSKR LLIDSLDALE LKLTWEEAQD LLRPPPTVKP SIVTIEDHDF  540
EEYEEPPVFG KRSIFVIRSI GGQEQWAQCD SCCKWRRLPV DVLLPPKWTC VDNAWDQSRC  600
SCSSPDELTP RELEHLLTLN KEFKRRRMTS IQRPAQEQES SGLDALANAA ILGDEGDPGT  660
TAVATTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTM MMRKKKRQSE  720
REAEIALRNQ HLSGPRDEAE VESSSKHVLT PQDPSENEAR SVNELEPKSQ SNNVSNKMVD  780
IGKGHIDLNC HPDREEESQV GLARMSMMNL LQVASLPLET YLKQNGLTSL VSEQQGSSAS  840
HVPPQAGESE GRPAEDCQLV SAVQEQKQES GGEENCGTGP EQSQNDPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-683094382131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1703714KRRFKTMMMRKK
2703716KRRFKTMMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G117700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623533.10.0B3 domain-containing transcription repressor VAL2 isoform X6
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A2C9VB940.0A0A2C9VB94_MANES; Uncharacterized protein
STRINGcassava4.1_001408m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]