PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G117700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 925aa    MW: 101772 Da    PI: 6.8495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G117700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.4e-18331431199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Manes.09G117700.1.p 331 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 419
                          99**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                            e++lv++++++
  Manes.09G117700.1.p 420 -PEGKLVMGFRKA 431
                          .777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-30322434IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19328432IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-21329430No hitNo description
PROSITE profilePS5086311.011331432IPR003340B3 DNA binding domain
SMARTSM010191.1E-19331432IPR003340B3 DNA binding domain
PfamPF023621.1E-15331431IPR003340B3 DNA binding domain
PROSITE profilePS5105013.655596646IPR011124Zinc finger, CW-type
PfamPF074961.1E-8601643IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MSELMLRMES KTCMNALCGA STSSGWRKGW PLRSGEFANL CDKCGSAYEQ SIFCDMFHSK  60
DSGWRNCASC GKRLHCGCIA SIFLLELLDH GGGVNCISCT KSSGVNSVMG NEKPNGFGTS  120
KGDDIGELQS ADNQLDGERK LMQSGCTTEG IGTRDLLQLQ NEETSGSFRQ MKQEDNVAPR  180
AEIGITSFSN FNQASNGLSQ NSKPEIHKST IAAKELYESL AQTNLSITLG SPLGNPNSFP  240
GAVVDERGQS KAPSPLQQGS RSRHLLPKPP KSALATGLES NVGMVSQIRV ARPPTEGRGR  300
NQLLPRYWPR ITDQELQQIS ADSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI  360
SQPEGLPLRI QDVKGKDWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP  420
EGKLVMGFRK ASNNMAMQDI QPSAIPNGVH SSESFFSGVF ENLPIISGYS GLLQSIKGST  480
ETHLSALSKH LHSANGDTSW HKFEKHEERM RESLLLPSLL VPERKRTRNI GSKSKRLLID  540
SLDALELKLT WEEAQDLLRP PPTVKPSIVT IEDHDFEEYE EPPVFGKRSI FVIRSIGGQE  600
QWAQCDSCCK WRRLPVDVLL PPKWTCVDNA WDQSRCSCSS PDELTPRELE HLLTLNKEFK  660
RRRMTSIQRP AQEQESSGLD ALANAAILGD EGDPGTTAVA TTTKHPRHRP GCSCIVCIQP  720
PSGKGKHKPT CTCNVCMTVK RRFKTMMMRK KKRQSEREAE IALRNQHLSG PRDEAEVESS  780
SKHVLTPQDP SENEARSVNE LEPKSQSNNV SNKMVDIGKG HIDLNCHPDR EEESQVGLAR  840
MSMMNLLQVA SLPLETYLKQ NGLTSLVSEQ QGSSASHVPP QAGESEGRPA EDCQLVSAVQ  900
EQKQESGGEE NCGTGPEQSQ NDPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-683094382131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1739750KRRFKTMMMRKK
2739752KRRFKTMMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G117700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291958e-77GU129195.1 Populus balsamifera MORC family ATPase (VP) gene, partial cds.
GenBankHQ9020518e-77HQ902051.2 Populus laurifolia MORC family ATPase (VP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623529.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2C9VC870.0A0A2C9VC87_MANES; Uncharacterized protein
STRINGcassava4.1_001408m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]