PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G109800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 458aa    MW: 51832.7 Da    PI: 4.877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G109800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1532.8e-47914563374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++g+ +la+ ++  +se +s +g+p+ Rla+ + + L+++              +++s   s++   a+++f++++P+ +
  Manes.09G109800.1.p  91 HLLKAYGEAMEEGQGHLADVIMRCMSEKVSLAGEPLLRLAFNLSQDLEKHGDY----------LKQES---SKNFEEAFRAFYQIFPYGR 167
                          78889999*********************************988888877554..........33333...5667788999********* PP

                 GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpf 176
                          f+h++aN++Ileav  + er+Hi+Dfd+++G+QWp++l+aLa  ++g   +++T+v+ ++++        + ee ++rL + A+++g+++
  Manes.09G109800.1.p 168 FAHFAANSTILEAVPADtERIHIVDFDMGEGVQWPPMLEALARLQKG---VKLTAVKWENTDcdrdpLMWSFEEAKRRLLDHARRFGLKL 254
                          **************9888************************99888...********999897665566789***************** PP

                 GRAS 177 efnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk.....slsPkvvvvveqeadh...nsesFlerf 257
                          + + + +++ +++++ ++ r  ++E la n+++ l ++   +v +++  +e+L++ +     s++  ++++ + ++     ns+sF   f
  Manes.09G109800.1.p 255 KMEEMaIEDLVSEINRRKKRGGRKEWLAFNCMVGLPHMG--RVRSRKVVEEFLRVAReskanSVNRGIIILGDGDCGEnlsNSSSFGSFF 342
                          ***99444577888888888888***************9..677777789***9987332335667799*****9754337899****** PP

                 GRAS 258 lealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                             + +y +l++s+e+ +p +  e+r+ +E  ++++ i++ v  e+ + ++++      +  +++  ++  ++s + +++a+ l++  + 
  Manes.09G109800.1.p 343 EGNMAHYLTLLESIESDFPVNLaEARMALECLFVAPYISSEVWLEKWMDIKECC-----KVEMGS-SLEGWSISRECTEEARELVKGNEs 426
                          *******************98779***********************9666655.....555654.5999*******************8 PP

                 GRAS 346 sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                          + g r   + +++++l Wk+++Lv vSaW+
  Manes.09G109800.1.p 427 FYGLRTGgQLNNEMILEWKGKSLVRVSAWK 456
                          8888877677*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.70363457IPR005202Transcription factor GRAS
PfamPF035149.6E-4591456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MFQTQISQSP SGDDHMQTML TLEDFLNDPN FYRDMEFVLS DSEGSFPSQE ASNEGSGWSP  60
SPSIKSNEAS SSSLTLPRKE SELNSQLSVL HLLKAYGEAM EEGQGHLADV IMRCMSEKVS  120
LAGEPLLRLA FNLSQDLEKH GDYLKQESSK NFEEAFRAFY QIFPYGRFAH FAANSTILEA  180
VPADTERIHI VDFDMGEGVQ WPPMLEALAR LQKGVKLTAV KWENTDCDRD PLMWSFEEAK  240
RRLLDHARRF GLKLKMEEMA IEDLVSEINR RKKRGGRKEW LAFNCMVGLP HMGRVRSRKV  300
VEEFLRVARE SKANSVNRGI IILGDGDCGE NLSNSSSFGS FFEGNMAHYL TLLESIESDF  360
PVNLAEARMA LECLFVAPYI SSEVWLEKWM DIKECCKVEM GSSLEGWSIS RECTEEAREL  420
VKGNESFYGL RTGGQLNNEM ILEWKGKSLV RVSAWKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1512245636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G109800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622064.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2C9VB740.0A0A2C9VB74_MANES; Uncharacterized protein
STRINGcassava4.1_021260m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.14e-16GRAS family protein