PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G102700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35089.3 Da PI: 7.7178 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 28 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT eE +++ +a +++ ++ +W ++a++++ g+t +++ ++ Manes.09G102700.1.p 28 KWTHEENKQFENALALYDKDepdRWQKVAAMIP-GKTVGDVIKQYRE 73 8********************************.******9999986 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 137 | 181 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky Manes.09G102700.1.p 137 PWTEEEHRQFLIGLEKHGKGDWRNISRDFVTTRTPTQVASHAQKY 181 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 22 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.896 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 7.8E-10 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.51E-11 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.69E-8 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 4.1E-8 | 28 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.786 | 129 | 186 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-17 | 132 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-16 | 133 | 185 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-11 | 134 | 184 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-12 | 134 | 180 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.73E-10 | 137 | 182 | No hit | No description |
Pfam | PF00249 | 5.3E-12 | 137 | 181 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MNPGSEILSP ASYLANSNWL FQETRGTKWT HEENKQFENA LALYDKDEPD RWQKVAAMIP 60 GKTVGDVIKQ YRELEEDVFD IEAGLIPIPG YISSDSFTLD CVNNDQGYDS FKQYYTPGGK 120 RTAATRSREP GRKKGVPWTE EEHRQFLIGL EKHGKGDWRN ISRDFVTTRT PTQVASHAQK 180 YFIRQSTEGK DKRRSSIHDI TIVNLLPDVK SSSADEKKSS PNHSISSLQS QPQPKIVGIR 240 KGLADMKLQN EGEDGAGVFS QANGNLLMPP FCEISSYGQK LQEHNLLKET LPGYHFPPYN 300 LISQQPMKRQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 26 | 91 | 8 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G102700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621851.1 | 0.0 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 5e-93 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2C9VB03 | 0.0 | A0A2C9VB03_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012347m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-111 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G102700.1.p |
Publications ? help Back to Top | |||
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