PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.09G090300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 21058.4 Da PI: 10.1169 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ L H +H Manes.09G090300.1.p 49 FECKTCNKKFPSFQALGGHRASH 71 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00042 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H Manes.09G090300.1.p 105 HECSICGMEFALGQALGGHMRKH 127 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.17E-9 | 48 | 71 | No hit | No description |
Pfam | PF13912 | 2.4E-12 | 49 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.087 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.17E-9 | 100 | 127 | No hit | No description |
PROSITE profile | PS50157 | 9.286 | 105 | 127 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.8E-9 | 105 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.09 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MAMKRTRDNY RNLESLDMAK CLILLSQTLQ NNNPIKPFNT HHVDDDHLFE CKTCNKKFPS 60 FQALGGHRAS HKKPKIMGDN TNNDDNNKPI SVKLQISSAA KPKMHECSIC GMEFALGQAL 120 GGHMRKHRAA ITQGFGSAHA HPVVSKLPVM RRSNSIKRVF GLDLNLTPLE NDLEYLFGKM 180 APKVDPLI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.09G090300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624412.1 | 1e-139 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2C9V987 | 1e-138 | A0A2C9V987_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026397m | 1e-138 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-51 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.09G090300.1.p |