PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G082000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 544aa    MW: 61191.4 Da    PI: 5.9214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G082000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.68e-1231745432374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++ Ll cA+++s+ d  +a  l+  l++++s +g+p+qRl ay++e+L+ar+  s+s++y+al++ +     ss+ ++++ ++++++P+ 
  Manes.09G082000.1.p 174 KQMLLVCAQCISDADIPRAAGLMHVLEQMVSVSGEPVQRLGAYMLEGLRARVELSGSKIYRALKCDAPL---SSDLMTYMGILFKICPYW 260
                          789****************************************************************98...9999999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf++ +aN  I eave e  +HiiDf+i qG+QW+ L+++La+Rp+gpps+RiTgv++p+s   +   l+ +g++L+ fAe+++vpfef 
  Manes.09G082000.1.p 261 KFAYTAANVVIREAVEYEPIIHIIDFQIAQGTQWMFLIRSLADRPGGPPSVRITGVDDPQSAhaRGGGLHIVGQKLSCFAESCNVPFEFY 350
                          ************************************************************99889999********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                            +a +  +++le+Lrv+pgEal+Vn+ + lh+++desv++ ++rd++L+lvkslsPkvv+++eqe+++n+++Fl rf e+leyy a+f+
  Manes.09G082000.1.p 351 D-AAMSGCEVQLEHLRVQPGEALVVNFPYVLHHMPDESVNTWNHRDRLLRLVKSLSPKVVTLIEQESNTNTKPFLPRFKETLEYYNAMFE 439
                          9.89999*********************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s++a+++r++++ri+ E+++++r+ivn++acega+r+erhe ++kWr r+++aGF+++pl++++a+ ++ llr+++ + y ++e++g+l+
  Manes.09G082000.1.p 440 SIDAGASRDDKQRINAEQHCVARDIVNMIACEGADRVERHELFGKWRLRFSMAGFTQYPLTSTVASAVRDLLREYDRK-YGLQEKDGALY 528
                          ****************************************************************************55.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          l W++ ++ ++SaWr
  Manes.09G082000.1.p 529 LWWMNTAMSTFSAWR 543
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.075147524IPR005202Transcription factor GRAS
PfamPF035142.7E-120174543IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQTSQKHKSS AGIHGFYHQP QEIDPYGLSH IQILDNNVFS DVCSQGTTVS FQNYKEEYFT  60
LESSSATGGF VAYDSPAASV SSNRSPFSPQ GSHSCLSDPH HSPDNTYGSP MSGSSSADDD  120
NLLMRQKLKE LEFLLLGSES EITKNCDFCF HQADRLASWD WNQMVEMIPR LDMKQMLLVC  180
AQCISDADIP RAAGLMHVLE QMVSVSGEPV QRLGAYMLEG LRARVELSGS KIYRALKCDA  240
PLSSDLMTYM GILFKICPYW KFAYTAANVV IREAVEYEPI IHIIDFQIAQ GTQWMFLIRS  300
LADRPGGPPS VRITGVDDPQ SAHARGGGLH IVGQKLSCFA ESCNVPFEFY DAAMSGCEVQ  360
LEHLRVQPGE ALVVNFPYVL HHMPDESVNT WNHRDRLLRL VKSLSPKVVT LIEQESNTNT  420
KPFLPRFKET LEYYNAMFES IDAGASRDDK QRINAEQHCV ARDIVNMIAC EGADRVERHE  480
LFGKWRLRFS MAGFTQYPLT STVASAVRDL LREYDRKYGL QEKDGALYLW WMNTAMSTFS  540
AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-541755436375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G082000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623130.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2C9VAD30.0A0A2C9VAD3_MANES; Uncharacterized protein
STRINGcassava4.1_005031m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13