PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.09G066000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 246aa MW: 27667.3 Da PI: 5.0553 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 77.4 | 1.3e-24 | 1 | 74 | 14 | 71 |
E2F_TDP 14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg Manes.09G066000.2.p 1 MKVCEKVESkGTTTYNEVADELVAEfadpsnsvsspdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 74 589****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-39 | 1 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PIRSF | PIRSF009404 | 2.3E-111 | 1 | 245 | IPR015648 | Transcription factor DP |
SMART | SM01372 | 7.2E-26 | 1 | 74 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-19 | 1 | 75 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 3.0E-22 | 1 | 74 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 8.03E-43 | 79 | 182 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 8.7E-74 | 81 | 243 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.05E-42 | 81 | 194 | No hit | No description |
Pfam | PF08781 | 7.5E-41 | 82 | 192 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MKVCEKVESK GTTTYNEVAD ELVAEFADPS NSVSSPDQQQ YDEKNIRRRV YDALNVLMAL 60 DIISKDKKEI QWKGLPRTSL SDIEELKAER LGLRNRIEKK IAYLQELEEQ YVGLQNLIHR 120 NEQLYTSGKA PNGGVSLPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK 180 AMKFCERPQS DDMAPNLATD GGEGSSMSNM FPQQILTSPG TNTPIRPPTS PPIPGIIKAR 240 VKHEH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 4e-32 | 1 | 79 | 17 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.09G066000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623827.1 | 0.0 | transcription factor-like protein DPB, partial | ||||
Swissprot | Q9FNY2 | 1e-120 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A2C9V8E5 | 0.0 | A0A2C9V8E5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010769m | 1e-178 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-123 | Transcription factor DP |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.09G066000.2.p |