PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G061400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 26092.6 Da PI: 8.5958 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Manes.09G061400.1.p 62 KKKRLTNDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 115 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.7 | 3.2e-38 | 61 | 152 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da++ e+++L++ev +L+ Manes.09G061400.1.p 61 EKKKRLTNDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDTLKQEFDAVSVEKQKLQEEVMKLKGI 150 69*************************************************************************************976 PP HD-ZIP_I/II 91 lk 92 l+ Manes.09G061400.1.p 151 LR 152 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-19 | 51 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.2E-17 | 60 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.7E-17 | 62 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-15 | 62 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 67 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.8E-5 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-5 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-8 | 117 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEWHGNLRTF VPRPENPFNF LYDSSCYDQY NQGMDVKPPV MSETAQVIVP VMEKLRYGSH 60 EKKKRLTNDQ LESLERSFQE EIKLDPDRKM KLSRELGLQP RQIAVWFQNR RARWKAKQLE 120 RLYDTLKQEF DAVSVEKQKL QEEVMKLKGI LREQATKKQV LSTGYTEISG EETLQSTWVG 180 IRSSGGKPRG THQQEIAECN YLLNVDEYNP GISSYWAVLP SYP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 117 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G061400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624349.1 | 1e-167 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 2e-51 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A2C9V9S3 | 1e-165 | A0A2C9V9S3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029341m | 1e-166 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 8e-54 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G061400.1.p |
Publications ? help Back to Top | |||
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