PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G061200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 479aa MW: 54483.2 Da PI: 6.1567 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.1 | 1.1e-23 | 112 | 211 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sess 76 +Wt+++v++Li a+ +++++ + g+ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+t ++++ Manes.09G061200.2.p 112 KWTDSMVRLLIMAVFYIGDEAGPeGNdptgkkkagglsQKKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTgCKVV 201 7**************99988885133555666777777**********************************************779*** PP trihelix 77 stcpyfdqle 86 ++ ++++ ++ Manes.09G061200.2.p 202 ENQSLLETMD 211 ****999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.0E-21 | 110 | 236 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MEHNGLPGGI FSGMGSGMLG LEMPLQQQQQ QNPQNPQNSP HLHHPQMLGY GQHESDNHHP 60 QSQQAMKHGY PYASSTARQK PQSTVSDEDE PGFNGDDTTD GKRKVSPWQR MKWTDSMVRL 120 LIMAVFYIGD EAGPEGNDPT GKKKAGGLSQ KKGKWKSVSR AMMEKGFFVS PQQCEDKFND 180 LNKRYKRVND ILGKGTGCKV VENQSLLETM DLSPKMKEEV KKLLNSKHLF FREMCAYHNS 240 CGHGSSGVAT DQSNPQHPQA SSHAQQQRCS HSSETAQFMT HSRSETEGSK MAKRGSNEED 300 DEEDDDESEE DEDDSDDEVD EAIEGNSRGH KNCDHGHEDE DDHDEKGSKK RQRTEVFSLS 360 SAMMQQLNSD LVSVIQDGAK STWEKKHWMK LRLMQLEEQQ VSYQCQAFEL EKQRLKWVKF 420 SSKKEREMER AKLENERRRL ESERMVLLIR QKELELLDLH QQQQISSNKR SDPSSITG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G061200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622201.1 | 0.0 | ESF1 homolog | ||||
Refseq | XP_021622202.1 | 0.0 | ESF1 homolog | ||||
Refseq | XP_021622203.1 | 0.0 | ESF1 homolog | ||||
TrEMBL | A0A251K4M8 | 0.0 | A0A251K4M8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006702m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 6e-77 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G061200.2.p |