PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G061000.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 307aa    MW: 34035.3 Da    PI: 6.6008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G061000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.71.5e-18156242186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r ++  ++ +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  Manes.09G061000.4.p 156 EWSDTAIECLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCQKQAKTVEQCKNKVDNLKKRYKLERHRMSNG-GISVSHWPWFKKME 242
                          5*************************************666667788************************99.67778********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-21154244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNHHSTN PNHHHHHHHH ILHQPYEPHP FTVKSAPIHV PPQSILPSPV  60
AGSGTGAKSL GGGVEEAEEQ VVVEEDNETD SAFHEVNPFS DNSNPFNNER NLRANKRREG  120
EDHSDGANSN HYIYKRPRPS GSAGNSSGEY RKDREEWSDT AIECLLDAYT EKFTQLNRGN  180
LRGRDWEEVA ATVSERCQKQ AKTVEQCKNK VDNLKKRYKL ERHRMSNGGI SVSHWPWFKK  240
MEEIVGNSLP MKVTTDENKS GGSSGTAARQ SKSVGFYSIS IKQLVILVIG GVTGDEIGQL  300
GNCFSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G061000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622885.10.0uncharacterized protein LOC110622620
RefseqXP_021622886.10.0uncharacterized protein LOC110622620
RefseqXP_021622887.10.0uncharacterized protein LOC110622620
TrEMBLA0A2C9VAI40.0A0A2C9VAI4_MANES; Uncharacterized protein
STRINGcassava4.1_013750m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-71Trihelix family protein