PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G061000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 538aa    MW: 58987.9 Da    PI: 6.7635
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G061000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34e-18156242186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r ++  ++ +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  Manes.09G061000.2.p 156 EWSDTAIECLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCQKQAKTVEQCKNKVDNLKKRYKLERHRMSNG-GISVSHWPWFKKME 242
                          5*************************************666667788************************99.67778********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-21154244No hitNo description
Gene3DG3DSA:3.40.1160.101.5E-70288530IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.371296531IPR015963Uridylate kinase, bacteria
SuperFamilySSF536339.95E-58297530IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.15E-119299531No hitNo description
PfamPF006962.1E-23300510IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNHHSTN PNHHHHHHHH ILHQPYEPHP FTVKSAPIHV PPQSILPSPV  60
AGSGTGAKSL GGGVEEAEEQ VVVEEDNETD SAFHEVNPFS DNSNPFNNER NLRANKRREG  120
EDHSDGANSN HYIYKRPRPS GSAGNSSGEY RKDREEWSDT AIECLLDAYT EKFTQLNRGN  180
LRGRDWEEVA ATVSERCQKQ AKTVEQCKNK VDNLKKRYKL ERHRMSNGGI SVSHWPWFKK  240
MEEIVGNSLP MKVTTDENKS GGSSGTAARQ SKRCTTATAG HVDQTNNIKS KSMCNIRWRR  300
VVLKISGVAL AGTGPNNIDP KVMVLIAREV AIACRLGVEV AIVIGGRNFF CGETWVTATG  360
SDRRTAYQIG MMASVMNSIL LQSELEKMGV QTRVQTAFTM QELAEPYNRQ RAIRHLEKGQ  420
VVIFGGIGTG AGNPLFSSDT AAALQASEIH AEAVLKGTNV DGVYDCHSRD NNVTFEHVSF  480
RDLVSRGATS MDMMALTCCE ENGIPVVVFN LLEPGNISKA LCGEQVGTLI DQTGSIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A3e-5829853050279Uridylate kinase
3nwy_B3e-5829853050279Uridylate kinase
3nwy_C3e-5829853050279Uridylate kinase
3nwy_D3e-5829853050279Uridylate kinase
3nwy_E3e-5829853050279Uridylate kinase
3nwy_F3e-5829853050279Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G061000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622885.10.0uncharacterized protein LOC110622620
RefseqXP_021622886.10.0uncharacterized protein LOC110622620
RefseqXP_021622887.10.0uncharacterized protein LOC110622620
TrEMBLA0A251KKQ10.0A0A251KKQ1_MANES; Uncharacterized protein
STRINGXP_002528640.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein