PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G060400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21527 Da PI: 4.4255 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 169 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C C++sF + L++H + H Manes.09G060400.1.p 169 FACVSCNRSFGSENALQSHTKAkH 192 78*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.06E-5 | 166 | 191 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
TFVGKPQLES KKAKSPAEKT KPSSSEPKQK VKIIEPQKED KPKEETDESS DDSSDDDDST 60 DDQDMVANGE DEEDAESDDE DDESDDEDDE SDDEDEEEPT RLKAEQGKKR SAEPAKKVPV 120 ADKKAKLVTP QKTEGKKVVG HVATPHPSKQ TVKTPANNDQ KKDQTQKSFA CVSCNRSFGS 180 ENALQSHTKA KHSAAQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G060400.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623113.1 | 3e-89 | histone deacetylase HDT1-like | ||||
TrEMBL | A0A2C9V9J2 | 1e-133 | A0A2C9V9J2_MANES; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_012243m | 1e-129 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-16 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G060400.1.p |