PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G059500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 397aa    MW: 43061.9 Da    PI: 8.0708
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G059500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.61.5e-25146189144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Manes.09G059500.1.p 146 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 189
                          79***************************************987 PP
2QLQ53.76.3e-1976112137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLlq+i+k
  Manes.09G059500.1.p  76 SYFSLAQWQELELQALIYRYMLAGAAVPPELLQPIKK 112
                          79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-1176112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1377110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.95777112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.918146190IPR014977WRC domain
PfamPF088797.2E-22147189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDFHLKQWRT QLHESEEQPS AKMPKLLMDP HQPHSQNPSA PLPLFLSESN SKISNLSALS  60
DSTSAATPRF PRMEGSYFSL AQWQELELQA LIYRYMLAGA AVPPELLQPI KKSLLHSPPY  120
FIHHPLQHYY QPALFQTGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ KYCERHVHRG  180
RNRSRKPVEI PTPTSSTITT TSVGIGGGVA GGTFNSTTST VATTLAAVTN GASLSFSGQS  240
PSTDLLHLNN GSSDSKPEMK GLFGHQNDVA NRNDGHILRH FFDDWPRSLQ EPDNAGSNAS  300
PVNSATCLTI SMPGNPPSDV SLKLSTGNGE EQTGPRGNER EHPQVNWTGA WGTTQVASMG  360
GPLAEALRSS TSNSSPTSVL HQLPPGSASE TSYLST*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G059500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623098.10.0growth-regulating factor 3 isoform X1
SwissprotQ8L8A74e-92GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A2C9V9Q70.0A0A2C9V9Q7_MANES; Uncharacterized protein
STRINGcassava4.1_009147m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.17e-68growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]