PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G051400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 314aa    MW: 35813.4 Da    PI: 8.4424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G051400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.81.8e-3294197199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k ltpsdv+k++rlv+pk++ae++    g +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F++++
  Manes.09G051400.1.p  94 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSADKGLFLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVSFERHR 183
                          99***************************9666678889************************************************998 PP

                          S.SEE..EEEEE-S CS
                   B3  87 r.sefelvvkvfrk 99 
                          + ++++l+++++r+
  Manes.09G051400.1.p 184 TdDGERLFIGWRRR 197
                          889999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-4189203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-3090186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-2892185No hitNo description
SMARTSM010198.0E-2694198IPR003340B3 DNA binding domain
PfamPF023624.4E-2994197IPR003340B3 DNA binding domain
PROSITE profilePS5086314.12894197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MFINLFSTDL PHTLRWTQHL RRHHQLSIMD PNTHPNSSWP SHRYSQYHHR HHLLFSPHSP  60
SFNFSLNRDD NEEQDPEAKQ PHHRQPELEK EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF  120
PLGGDSADKG LFLSFEDESG KLWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDVVSFE  180
RHRTDDGERL FIGWRRRGDN SSSVVVAQGN NGGLWSRGSY SSSSGYQPYQ HGHRVNVIAG  240
GVPFQHAGSG VQNSKKVRLF GVNLECQVEE SEPSTPDGSS LSSQGPTQQQ LYSFYSSTSS  300
SSNSSHSQMV SYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-51891973113B3 domain-containing transcription factor NGA1
5os9_B6e-51891973113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G051400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624216.10.0B3 domain-containing protein At2g36080
SwissprotQ8GYJ24e-66Y2608_ARATH; B3 domain-containing protein At2g36080
SwissprotQ9FNI36e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2C9V9Q20.0A0A2C9V9Q2_MANES; Uncharacterized protein
STRINGcassava4.1_012252m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]