PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G038000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 188aa    MW: 20455.9 Da    PI: 9.5915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G038000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000312143123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C k+F++   L  H++ H
  Manes.09G038000.1.p 21 FVCTICFKVFPSGQALGGHQNAH 43
                         89**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.48E-61849No hitNo description
PROSITE profilePS5015710.4922148IPR007087Zinc finger, C2H2
PfamPF139122.6E-82145IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDGDSSSEET TATSGPSTRN FVCTICFKVF PSGQALGGHQ NAHLQERSFR KTTPNILGAV  60
LNHPLPDDDD QPLPRSNSGN RTLIQQPGLI APEDGSKTPK RANVGHPIVG RANNGSSSLH  120
VHHPYVRLAD EEARRRRLTK NLLGERKPKQ VKKGEKSSET SIGDSGVDIE LSLKRKEYVD  180
LELKLGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G038000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623018.11e-136zinc finger protein 3-like
TrEMBLA0A2C9V7Q21e-135A0A2C9V7Q2_MANES; Uncharacterized protein
STRINGcassava4.1_024753m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1655245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.16e-09C2H2 family protein