PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G037900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 246aa    MW: 27241.1 Da    PI: 7.504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G037900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000443557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C+k F+++ +L  H++ H
  Manes.09G037900.1.p 35 YFCSRCSKGFPTSQSLGGHQNAH 57
                         78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-63362No hitNo description
PfamPF139121.8E-63460IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7183562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQSKPKANSC ESSNTASIRS ASLGDLLRMK QPDVYFCSRC SKGFPTSQSL GGHQNAHRKE  60
RNAERRQILE YRKLKKLASG IPIFSSQPPL PVVPPPPPTY FSNVHAAVRL HMVDPSHVSF  120
SRLDFHCHVG QSFAPPPPPP RPMLPGFRVA ERDRGFDLNT EFLGENPCGV RLENDNQRGL  180
LPWKLDMCPY MDSNEVMVEM GAPLGEVSSS LTNAIDAAEA DSFIMKAKET DEVILERELD  240
LALKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G037900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638122.12e-89uncharacterized protein LOC110633707
TrEMBLA0A2C9V7U50.0A0A2C9V7U5_MANES; Uncharacterized protein
STRINGcassava4.1_030564m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-08C2H2 family protein