PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G036700.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 609aa MW: 70072.1 Da PI: 6.6852

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G036700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.6e-24	166	251	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++Y+k++GF+vrk k ++s ng i +r f Cs+eg+r++++ + + ++ +r+etrtgC+a+++ + e +gkw+++++ +eHnH+l Manes.09G036700.3.p 166 EFYKKYSKRIGFTVRKGKVHRS-SNGDIRERFFFCSREGFRSKKQAN-KLTKFKRKETRTGCRARIRCTVE-NGKWVISQFCQEHNHQL 251 6*****************99.7788*************999.99999*************9.**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-21	166	251	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-22	349	443	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MRLVKMPLTA ELSCRREELW SRNLPKKTKA FQANEKPQFQ RRISLIQSSS DPYTPTAQNS 60 AVIAVSDGFY SPEFRGDFGA GLLDLHAMDD TELLPETLDN STENCASFDI HSLSSESEED 120 DALSSSSNED EIQSLSTFNA SKGTQEDNFQ VPELGMVFSS DGEVYEFYKK YSKRIGFTVR 180 KGKVHRSSNG DIRERFFFCS REGFRSKKQA NKLTKFKRKE TRTGCRARIR CTVENGKWVI 240 SQFCQEHNHQ LDGFSKTFEP YLVLPTRNEA GATKYFEFGK MGCSTYVHEA KINSLQAEDA 300 QSLINYFRHM QVEDSSFFYA VQVDANGCMT NFFWTDGRSK IDYEYFGDVL ILDTAFKMDK 360 FGMICAPFLG LNHHQQYVLF GCAFLLDKSN DSFCWLFETF MEAMRRRQPK TIFTDEGQPM 420 VDAVKMVMPE ANHQLGLWYV FRNVSKHLPT YYGQPDFASL FNKCISGCDT QEEFESRWSS 480 LLEQFDLHKN ACLNTLYMYR KRWAHVFNKR TFGAGIHCLE NIKNIFQNFT SETMSLPKFV 540 QQYFLAAEQQ RREELYEDFH CNGSAPEMTL HYGLVEKQAA SMYIHLHSVL CVPGGVEKTF 600 ISGVKGNF*

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MRLVKMPLTA ELSCRREELW SRNLPKKTKA FQANEKPQFQ RRISLIQSSS DPYTPTAQNS  60
AVIAVSDGFY SPEFRGDFGA GLLDLHAMDD TELLPETLDN STENCASFDI HSLSSESEED  120
DALSSSSNED EIQSLSTFNA SKGTQEDNFQ VPELGMVFSS DGEVYEFYKK YSKRIGFTVR  180
KGKVHRSSNG DIRERFFFCS REGFRSKKQA NKLTKFKRKE TRTGCRARIR CTVENGKWVI  240
SQFCQEHNHQ LDGFSKTFEP YLVLPTRNEA GATKYFEFGK MGCSTYVHEA KINSLQAEDA  300
QSLINYFRHM QVEDSSFFYA VQVDANGCMT NFFWTDGRSK IDYEYFGDVL ILDTAFKMDK  360
FGMICAPFLG LNHHQQYVLF GCAFLLDKSN DSFCWLFETF MEAMRRRQPK TIFTDEGQPM  420
VDAVKMVMPE ANHQLGLWYV FRNVSKHLPT YYGQPDFASL FNKCISGCDT QEEFESRWSS  480
LLEQFDLHKN ACLNTLYMYR KRWAHVFNKR TFGAGIHCLE NIKNIFQNFT SETMSLPKFV  540
QQYFLAAEQQ RREELYEDFH CNGSAPEMTL HYGLVEKQAA SMYIHLHSVL CVPGGVEKTF  600
ISGVKGNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G036700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624522.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2C9V7G9	0.0	A0A2C9V7G9_MANES; Uncharacterized protein
STRING	XP_006482039.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-72	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.09G036700.3.p