PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G036700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 646aa MW: 73606.3 Da PI: 6.5067

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G036700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.1	7.2e-24	203	288	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++Y+k++GF+vrk k ++s ng i +r f Cs+eg+r++++ + + ++ +r+etrtgC+a+++ + e +gkw+++++ +eHnH+l Manes.09G036700.1.p 203 EFYKKYSKRIGFTVRKGKVHRS-SNGDIRERFFFCSREGFRSKKQAN-KLTKFKRKETRTGCRARIRCTVE-NGKWVISQFCQEHNHQL 288 6*****************99.7788*************999.99999*************9.**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-21	203	288	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-22	386	480	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MAETSHSVTG PAASPSSLGA AQNSNMDFWY DIYNNHLNDS VIGPSRLDYE WGYVFGNSSS 60 KTRKRKKKDV GSTSTAYSNS DLSEALSAIS AHLSLSSSGS SSLHSSREGD QYQDTEKDVA 120 GFMKNHVGIF QDETLDNSTE NCASFDIHSL SSESEEDDAL SSSSNEDEIQ SLSTFNASKG 180 TQEDNFQVPE LGMVFSSDGE VYEFYKKYSK RIGFTVRKGK VHRSSNGDIR ERFFFCSREG 240 FRSKKQANKL TKFKRKETRT GCRARIRCTV ENGKWVISQF CQEHNHQLDG FSKTFEPYLV 300 LPTRNEAGAT KYFEFGKMGC STYVHEAKIN SLQAEDAQSL INYFRHMQVE DSSFFYAVQV 360 DANGCMTNFF WTDGRSKIDY EYFGDVLILD TAFKMDKFGM ICAPFLGLNH HQQYVLFGCA 420 FLLDKSNDSF CWLFETFMEA MRRRQPKTIF TDEGQPMVDA VKMVMPEANH QLGLWYVFRN 480 VSKHLPTYYG QPDFASLFNK CISGCDTQEE FESRWSSLLE QFDLHKNACL NTLYMYRKRW 540 AHVFNKRTFG AGIHCLENIK NIFQNFTSET MSLPKFVQQY FLAAEQQRRE ELYEDFHCNG 600 SAPEMTLHYG LVEKQAASMY IHLHSVLCVP GGVEKTFISG VKGNF*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MAETSHSVTG PAASPSSLGA AQNSNMDFWY DIYNNHLNDS VIGPSRLDYE WGYVFGNSSS  60
KTRKRKKKDV GSTSTAYSNS DLSEALSAIS AHLSLSSSGS SSLHSSREGD QYQDTEKDVA  120
GFMKNHVGIF QDETLDNSTE NCASFDIHSL SSESEEDDAL SSSSNEDEIQ SLSTFNASKG  180
TQEDNFQVPE LGMVFSSDGE VYEFYKKYSK RIGFTVRKGK VHRSSNGDIR ERFFFCSREG  240
FRSKKQANKL TKFKRKETRT GCRARIRCTV ENGKWVISQF CQEHNHQLDG FSKTFEPYLV  300
LPTRNEAGAT KYFEFGKMGC STYVHEAKIN SLQAEDAQSL INYFRHMQVE DSSFFYAVQV  360
DANGCMTNFF WTDGRSKIDY EYFGDVLILD TAFKMDKFGM ICAPFLGLNH HQQYVLFGCA  420
FLLDKSNDSF CWLFETFMEA MRRRQPKTIF TDEGQPMVDA VKMVMPEANH QLGLWYVFRN  480
VSKHLPTYYG QPDFASLFNK CISGCDTQEE FESRWSSLLE QFDLHKNACL NTLYMYRKRW  540
AHVFNKRTFG AGIHCLENIK NIFQNFTSET MSLPKFVQQY FLAAEQQRRE ELYEDFHCNG  600
SAPEMTLHYG LVEKQAASMY IHLHSVLCVP GGVEKTFISG VKGNF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	66	RKRKK
2	62	68	RKRKKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G036700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624522.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2C9V7L6	0.0	A0A2C9V7L6_MANES; Uncharacterized protein
STRING	POPTR_0016s05900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-72	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.09G036700.1.p